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Items: 1 to 20 of 93

1.

PIPEMicroDB: microsatellite database and primer generation tool for pigeonpea genome.

Sarika, Arora V, Iquebal MA, Rai A, Kumar D.

Database (Oxford). 2013 Feb 8;2013:bas054. doi: 10.1093/database/bas054. Print 2013.

2.

In silico mining of putative microsatellite markers from whole genome sequence of water buffalo (Bubalus bubalis) and development of first BuffSatDB.

Sarika, Arora V, Iquebal MA, Rai A, Kumar D.

BMC Genomics. 2013 Jan 19;14:43. doi: 10.1186/1471-2164-14-43.

3.

The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.).

Raju NL, Gnanesh BN, Lekha P, Jayashree B, Pande S, Hiremath PJ, Byregowda M, Singh NK, Varshney RK.

BMC Plant Biol. 2010 Mar 11;10:45. doi: 10.1186/1471-2229-10-45.

4.

Molecular mapping of QTLs for plant type and earliness traits in pigeonpea (Cajanus cajan L. Millsp.).

Kumawat G, Raje RS, Bhutani S, Pal JK, Mithra AS, Gaikwad K, Sharma TR, Singh NK.

BMC Genet. 2012 Oct 8;13:84. doi: 10.1186/1471-2156-13-84.

5.

SBMDb: first whole genome putative microsatellite DNA marker database of sugarbeet for bioenergy and industrial applications.

Iquebal MA, Jaiswal S, Angadi UB, Sablok G, Arora V, Kumar S, Rai A, Kumar D.

Database (Oxford). 2015 Dec 8;2015. pii: bav111. doi: 10.1093/database/bav111. Print 2015.

6.

Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.).

Bohra A, Dubey A, Saxena RK, Penmetsa RV, Poornima KN, Kumar N, Farmer AD, Srivani G, Upadhyaya HD, Gothalwal R, Ramesh S, Singh D, Saxena K, Kishor PB, Singh NK, Town CD, May GD, Cook DR, Varshney RK.

BMC Plant Biol. 2011 Mar 29;11:56. doi: 10.1186/1471-2229-11-56.

7.

An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations.

Bohra A, Saxena RK, Gnanesh BN, Saxena K, Byregowda M, Rathore A, Kavikishor PB, Cook DR, Varshney RK.

Theor Appl Genet. 2012 Oct;125(6):1325-38. doi: 10.1007/s00122-012-1916-5. Epub 2012 Jul 8.

8.

Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies.

Varshney RK, Kudapa H, Roorkiwal M, Thudi M, Pandey MK, Saxena RK, Chamarthi SK, Mohan SM, Mallikarjuna N, Upadhyaya H, Gaur PM, Krishnamurthy L, Saxena KB, Nigam SN, Pande S.

J Biosci. 2012 Nov;37(5):811-20. Review.

9.

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers.

Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang SP, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X, Jackson SA.

Nat Biotechnol. 2011 Nov 6;30(1):83-9. doi: 10.1038/nbt.2022.

PMID:
22057054
10.

Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.).

Varshney RK, Penmetsa RV, Dutta S, Kulwal PL, Saxena RK, Datta S, Sharma TR, Rosen B, Carrasquilla-Garcia N, Farmer AD, Dubey A, Saxena KB, Gao J, Fakrudin B, Singh MN, Singh BP, Wanjari KB, Yuan M, Srivastava RK, Kilian A, Upadhyaya HD, Mallikarjuna N, Town CD, Bruening GE, He G, May GD, McCombie R, Jackson SA, Singh NK, Cook DR.

Mol Breed. 2010 Oct;26(3):393-408. Epub 2009 Sep 17.

11.

New microsatellite markers for pigeonpea (cajanus cajan (L.) millsp.).

Odeny DA, Jayashree B, Gebhardt C, Crouch J.

BMC Res Notes. 2009 Mar 6;2:35. doi: 10.1186/1756-0500-2-35.

12.

Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.).

Dubey A, Farmer A, Schlueter J, Cannon SB, Abernathy B, Tuteja R, Woodward J, Shah T, Mulasmanovic B, Kudapa H, Raju NL, Gothalwal R, Pande S, Xiao Y, Town CD, Singh NK, May GD, Jackson S, Varshney RK.

DNA Res. 2011 Jun;18(3):153-64. doi: 10.1093/dnares/dsr007. Epub 2011 May 12.

13.

Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes.

Saxena RK, Penmetsa RV, Upadhyaya HD, Kumar A, Carrasquilla-Garcia N, Schlueter JA, Farmer A, Whaley AM, Sarma BK, May GD, Cook DR, Varshney RK.

DNA Res. 2012 Dec;19(6):449-61. doi: 10.1093/dnares/dss025. Epub 2012 Oct 26.

14.

Novel genic microsatellite markers from Cajanus scarabaeoides and their comparative efficiency in revealing genetic diversity in pigeonpea.

Datta S, Singh P, Mahfooz S, Patil PG, Chaudhary AK, Agbagwa IO, Nadarajan N.

J Genet. 2013 Apr 12;92(1):e24-30. No abstract available.

15.

Identification of microsatellite markers in the rye genome.

Bolibok H, Rakoczy-Trojanowska M, Wyrzykowska M, Radecka M, Orczyk W.

Cell Mol Biol Lett. 2006;11(2):291-8.

PMID:
16847573
16.

CicArMiSatDB: the chickpea microsatellite database.

Doddamani D, Katta MA, Khan AW, Agarwal G, Shah TM, Varshney RK.

BMC Bioinformatics. 2014 Jun 21;15:212. doi: 10.1186/1471-2105-15-212.

17.

Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.).

Mir RR, Kudapa H, Srikanth S, Saxena RK, Sharma A, Azam S, Saxena K, Varma Penmetsa R, Varshney RK.

Theor Appl Genet. 2014 Dec;127(12):2663-78. doi: 10.1007/s00122-014-2406-8. Epub 2014 Oct 21.

18.

LeishMicrosatDB: open source database of repeat sequences detected in six fully sequenced Leishmania genomes.

Dikhit MR, Moharana KC, Sahoo BR, Sahoo GC, Das P.

Database (Oxford). 2014 Aug 14;2014. pii: bau078. doi: 10.1093/database/bau078. Print 2014.

19.

A comprehensive transcriptome assembly of Pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms.

Kudapa H, Bharti AK, Cannon SB, Farmer AD, Mulaosmanovic B, Kramer R, Bohra A, Weeks NT, Crow JA, Tuteja R, Shah T, Dutta S, Gupta DK, Singh A, Gaikwad K, Sharma TR, May GD, Singh NK, Varshney RK.

Mol Plant. 2012 Sep;5(5):1020-8. doi: 10.1093/mp/ssr111. Epub 2012 Jan 11.

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