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Items: 1 to 20 of 77

1.

Endogenous retroviruses function as species-specific enhancer elements in the placenta.

Chuong EB, Rumi MA, Soares MJ, Baker JC.

Nat Genet. 2013 Mar;45(3):325-9. doi: 10.1038/ng.2553. Epub 2013 Feb 10.

2.

Retroviruses facilitate the rapid evolution of the mammalian placenta.

Chuong EB.

Bioessays. 2013 Oct;35(10):853-61. doi: 10.1002/bies.201300059. Epub 2013 Jul 19. Erratum in: Bioessays. 2014 Aug;36(8):807.

3.

The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes.

Collins PL, Kyle KE, Egawa T, Shinkai Y, Oltz EM.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8367-72. doi: 10.1073/pnas.1422187112. Epub 2015 Jun 22.

4.

Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4.

Herz HM, Mohan M, Garruss AS, Liang K, Takahashi YH, Mickey K, Voets O, Verrijzer CP, Shilatifard A.

Genes Dev. 2012 Dec 1;26(23):2604-20. doi: 10.1101/gad.201327.112. Epub 2012 Nov 19.

5.

De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET.

Rowe HM, Friedli M, Offner S, Verp S, Mesnard D, Marquis J, Aktas T, Trono D.

Development. 2013 Feb 1;140(3):519-29. doi: 10.1242/dev.087585.

6.

Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells.

Liu S, Brind'Amour J, Karimi MM, Shirane K, Bogutz A, Lefebvre L, Sasaki H, Shinkai Y, Lorincz MC.

Genes Dev. 2014 Sep 15;28(18):2041-55. doi: 10.1101/gad.244848.114. Erratum in: Genes Dev. 2015 Jan 1;29(1):108.

7.

Mll3 and Mll4 Facilitate Enhancer RNA Synthesis and Transcription from Promoters Independently of H3K4 Monomethylation.

Dorighi KM, Swigut T, Henriques T, Bhanu NV, Scruggs BS, Nady N, Still CD 2nd, Garcia BA, Adelman K, Wysocka J.

Mol Cell. 2017 May 18;66(4):568-576.e4. doi: 10.1016/j.molcel.2017.04.018. Epub 2017 May 5.

PMID:
28483418
8.

Baton pass hypothesis: successive incorporation of unconserved endogenous retroviral genes for placentation during mammalian evolution.

Imakawa K, Nakagawa S, Miyazawa T.

Genes Cells. 2015 Oct;20(10):771-88. doi: 10.1111/gtc.12278. Epub 2015 Sep 7. Review.

9.

Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells.

Elsässer SJ, Noh KM, Diaz N, Allis CD, Banaszynski LA.

Nature. 2015 Jun 11;522(7555):240-244. doi: 10.1038/nature14345. Epub 2015 May 4.

10.

The LTR enhancer of ERV-9 human endogenous retrovirus is active in oocytes and progenitor cells in transgenic zebrafish and humans.

Pi W, Yang Z, Wang J, Ruan L, Yu X, Ling J, Krantz S, Isales C, Conway SJ, Lin S, Tuan D.

Proc Natl Acad Sci U S A. 2004 Jan 20;101(3):805-10. Epub 2004 Jan 12.

11.

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis.

Bogdanovic O, Fernandez-Miñán A, Tena JJ, de la Calle-Mustienes E, Hidalgo C, van Kruysbergen I, van Heeringen SJ, Veenstra GJ, Gómez-Skarmeta JL.

Genome Res. 2012 Oct;22(10):2043-53. doi: 10.1101/gr.134833.111. Epub 2012 May 16.

12.

Is there a role for endogenous retroviruses to mediate long-term adaptive phenotypic response upon environmental inputs?

Sharif J, Shinkai Y, Koseki H.

Philos Trans R Soc Lond B Biol Sci. 2013 Jan 5;368(1609):20110340. doi: 10.1098/rstb.2011.0340. Review.

13.

Regulatory evolution of innate immunity through co-option of endogenous retroviruses.

Chuong EB, Elde NC, Feschotte C.

Science. 2016 Mar 4;351(6277):1083-7. doi: 10.1126/science.aad5497.

14.

Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns.

Roh TY, Wei G, Farrell CM, Zhao K.

Genome Res. 2007 Jan;17(1):74-81. Epub 2006 Nov 29.

15.

H3K4 mono- and di-methyltransferase MLL4 is required for enhancer activation during cell differentiation.

Lee JE, Wang C, Xu S, Cho YW, Wang L, Feng X, Baldridge A, Sartorelli V, Zhuang L, Peng W, Ge K.

Elife. 2013 Dec 24;2:e01503. doi: 10.7554/eLife.01503.

16.

Dynamic evolution of endogenous retrovirus-derived genes expressed in bovine conceptuses during the period of placentation.

Nakagawa S, Bai H, Sakurai T, Nakaya Y, Konno T, Miyazawa T, Gojobori T, Imakawa K.

Genome Biol Evol. 2013;5(2):296-306. doi: 10.1093/gbe/evt007.

17.

Histone H3K27ac separates active from poised enhancers and predicts developmental state.

Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, Hanna J, Lodato MA, Frampton GM, Sharp PA, Boyer LA, Young RA, Jaenisch R.

Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21931-6. doi: 10.1073/pnas.1016071107. Epub 2010 Nov 24.

18.

The evolutionary capacitor HSP90 buffers the regulatory effects of mammalian endogenous retroviruses.

Hummel B, Hansen EC, Yoveva A, Aprile-Garcia F, Hussong R, Sawarkar R.

Nat Struct Mol Biol. 2017 Mar;24(3):234-242. doi: 10.1038/nsmb.3368. Epub 2017 Jan 30.

PMID:
28134929
19.

Rapid and pervasive changes in genome-wide enhancer usage during mammalian development.

Nord AS, Blow MJ, Attanasio C, Akiyama JA, Holt A, Hosseini R, Phouanenavong S, Plajzer-Frick I, Shoukry M, Afzal V, Rubenstein JL, Rubin EM, Pennacchio LA, Visel A.

Cell. 2013 Dec 19;155(7):1521-31. doi: 10.1016/j.cell.2013.11.033.

20.

Changes in the enhancer landscape during early placental development uncover a trophoblast invasion gene-enhancer network.

Tuteja G, Chung T, Bejerano G.

Placenta. 2016 Jan;37:45-55. doi: 10.1016/j.placenta.2015.11.001. Epub 2015 Nov 6.

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