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Items: 1 to 20 of 96

1.

Genotyping 1000 yeast strains by next-generation sequencing.

Wilkening S, Tekkedil MM, Lin G, Fritsch ES, Wei W, Gagneur J, Lazinski DW, Camilli A, Steinmetz LM.

BMC Genomics. 2013 Feb 9;14:90. doi: 10.1186/1471-2164-14-90.

2.

ReCombine: a suite of programs for detection and analysis of meiotic recombination in whole-genome datasets.

Anderson CM, Chen SY, Dimon MT, Oke A, DeRisi JL, Fung JC.

PLoS One. 2011;6(10):e25509. doi: 10.1371/journal.pone.0025509. Epub 2011 Oct 25.

3.

Next-generation sequencing of multiple individuals per barcoded library by deconvolution of sequenced amplicons using endonuclease fragment analysis.

Andersen JD, Pereira V, Pietroni C, Mikkelsen M, Johansen P, Børsting C, Morling N.

Biotechniques. 2014 Aug 1;57(2):91-4. doi: 10.2144/000114200. eCollection 2014 Aug.

4.

SMRT Sequencing for Parallel Analysis of Multiple Targets and Accurate SNP Phasing.

Guo X, Lehner K, O'Connell K, Zhang J, Dave SS, Jinks-Robertson S.

G3 (Bethesda). 2015 Oct 23;5(12):2801-8. doi: 10.1534/g3.115.023317.

5.

Global analysis of transcription factor-binding sites in yeast using ChIP-Seq.

Lefrançois P, Gallagher JE, Snyder M.

Methods Mol Biol. 2014;1205:231-55. doi: 10.1007/978-1-4939-1363-3_15.

6.

High-throughput massively parallel sequencing for fetal aneuploidy detection from maternal plasma.

Jensen TJ, Zwiefelhofer T, Tim RC, Džakula Ž, Kim SK, Mazloom AR, Zhu Z, Tynan J, Lu T, McLennan G, Palomaki GE, Canick JA, Oeth P, Deciu C, van den Boom D, Ehrich M.

PLoS One. 2013;8(3):e57381. doi: 10.1371/journal.pone.0057381. Epub 2013 Mar 6.

7.

A practical method for barcoding and size-trimming PCR templates for amplicon sequencing.

Mäki A, Rissanen AJ, Tiirola M.

Biotechniques. 2016 Feb 1;60(2):88-90. doi: 10.2144/000114380. eCollection 2016 Feb.

8.

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.

Lefrançois P, Euskirchen GM, Auerbach RK, Rozowsky J, Gibson T, Yellman CM, Gerstein M, Snyder M.

BMC Genomics. 2009 Jan 21;10:37. doi: 10.1186/1471-2164-10-37.

9.

Skim-based genotyping by sequencing.

Golicz AA, Bayer PE, Edwards D.

Methods Mol Biol. 2015;1245:257-70. doi: 10.1007/978-1-4939-1966-6_19.

PMID:
25373763
10.

A cost-effective method for high-throughput construction of illumina sequencing libraries.

Dunham JP, Friesen ML.

Cold Spring Harb Protoc. 2013 Sep 1;2013(9):820-34. doi: 10.1101/pdb.prot074187.

11.

BEST: barcode enabled sequencing of tetrads.

Scott AC, Ludlow CL, Cromie GA, Dudley AM.

J Vis Exp. 2014 May 1;(87). doi: 10.3791/51401.

12.

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing.

Campbell NR, Harmon SA, Narum SR.

Mol Ecol Resour. 2015 Jul;15(4):855-67. doi: 10.1111/1755-0998.12357. Epub 2014 Dec 25.

PMID:
25476721
13.

Inexpensive multiplexed library preparation for megabase-sized genomes.

Baym M, Kryazhimskiy S, Lieberman TD, Chung H, Desai MM, Kishony R.

PLoS One. 2015 May 22;10(5):e0128036. doi: 10.1371/journal.pone.0128036. eCollection 2015. Erratum in: PLoS One. 2015;10(6):e0131262.

14.

QTL mapping by pooled-segregant whole-genome sequencing in yeast.

Pais TM, Foulquié-Moreno MR, Thevelein JM.

Methods Mol Biol. 2014;1152:251-66. doi: 10.1007/978-1-4939-0563-8_15.

PMID:
24744038
16.

Generating barcoded libraries for multiplex high-throughput sequencing.

Knapp M, Stiller M, Meyer M.

Methods Mol Biol. 2012;840:155-70. doi: 10.1007/978-1-61779-516-9_19.

PMID:
22237533
17.

Preparation of SELEX Samples for Next-Generation Sequencing.

Tolle F, Mayer G.

Methods Mol Biol. 2016;1380:77-84. doi: 10.1007/978-1-4939-3197-2_6.

PMID:
26552817
18.

Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing.

Lu S, Zong C, Fan W, Yang M, Li J, Chapman AR, Zhu P, Hu X, Xu L, Yan L, Bai F, Qiao J, Tang F, Li R, Xie XS.

Science. 2012 Dec 21;338(6114):1627-30. doi: 10.1126/science.1229112.

19.

Preparation of Yeast DNA Sequencing Libraries.

Schwartz K, Sherlock G.

Cold Spring Harb Protoc. 2016 Oct 3;2016(10):pdb.prot088930. doi: 10.1101/pdb.prot088930.

PMID:
27698239
20.

High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array™ System for simplified amplicon library preparation.

Moonsamy PV, Williams T, Bonella P, Holcomb CL, Höglund BN, Hillman G, Goodridge D, Turenchalk GS, Blake LA, Daigle DA, Simen BB, Hamilton A, May AP, Erlich HA.

Tissue Antigens. 2013 Mar;81(3):141-9. doi: 10.1111/tan.12071.

PMID:
23398507

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