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Items: 1 to 20 of 105

1.

Memory efficient principal component analysis for the dimensionality reduction of large mass spectrometry imaging data sets.

Race AM, Steven RT, Palmer AD, Styles IB, Bunch J.

Anal Chem. 2013 Mar 19;85(6):3071-8. doi: 10.1021/ac302528v. Epub 2013 Mar 6.

PMID:
23394348
2.

Exploring three-dimensional matrix-assisted laser desorption/ionization imaging mass spectrometry data: three-dimensional spatial segmentation of mouse kidney.

Trede D, Schiffler S, Becker M, Wirtz S, Steinhorst K, Strehlow J, Aichler M, Kobarg JH, Oetjen J, Dyatlov A, Heldmann S, Walch A, Thiele H, Maass P, Alexandrov T.

Anal Chem. 2012 Jul 17;84(14):6079-87. doi: 10.1021/ac300673y. Epub 2012 Jul 5.

PMID:
22720760
3.

Dimensionality reduction and visualization in principal component analysis.

Ivosev G, Burton L, Bonner R.

Anal Chem. 2008 Jul 1;80(13):4933-44. doi: 10.1021/ac800110w. Epub 2008 Jun 7.

PMID:
18537272
4.

Stream-based Hebbian eigenfilter for real-time neuronal spike discrimination.

Yu B, Mak T, Li X, Smith L, Sun Y, Poon CS.

Biomed Eng Online. 2012 Apr 10;11:18. doi: 10.1186/1475-925X-11-18.

5.

Spatial and spectral correlations in MALDI mass spectrometry images by clustering and multivariate analysis.

McCombie G, Staab D, Stoeckli M, Knochenmuss R.

Anal Chem. 2005 Oct 1;77(19):6118-24.

PMID:
16194068
6.

Comparative urine analysis by liquid chromatography-mass spectrometry and multivariate statistics: method development, evaluation, and application to proteinuria.

Kemperman RF, Horvatovich PL, Hoekman B, Reijmers TH, Muskiet FA, Bischoff R.

J Proteome Res. 2007 Jan;6(1):194-206.

PMID:
17203964
7.

PCA based clustering for brain tumor segmentation of T1w MRI images.

Kaya IE, Pehlivanlı AÇ, Sekizkardeş EG, Ibrikci T.

Comput Methods Programs Biomed. 2017 Mar;140:19-28. doi: 10.1016/j.cmpb.2016.11.011. Epub 2016 Nov 24.

PMID:
28254075
8.

MALDI imaging combined with hierarchical clustering as a new tool for the interpretation of complex human cancers.

Deininger SO, Ebert MP, Fütterer A, Gerhard M, Röcken C.

J Proteome Res. 2008 Dec;7(12):5230-6. doi: 10.1021/pr8005777.

PMID:
19367705
9.

AMASS: algorithm for MSI analysis by semi-supervised segmentation.

Bruand J, Alexandrov T, Sistla S, Wisztorski M, Meriaux C, Becker M, Salzet M, Fournier I, Macagno E, Bafna V.

J Proteome Res. 2011 Oct 7;10(10):4734-43. doi: 10.1021/pr2005378. Epub 2011 Aug 25.

10.
11.

Efficient spatial segmentation of large imaging mass spectrometry datasets with spatially aware clustering.

Alexandrov T, Kobarg JH.

Bioinformatics. 2011 Jul 1;27(13):i230-8. doi: 10.1093/bioinformatics/btr246.

12.

Visualization of high resolution spatial mass spectrometric data during acquisition.

Thomas M, Heath BS, Laskin J, Li D, Liu E, Hui K, Kuprat AP, van Dam KK, Carson JP.

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:5545-8. doi: 10.1109/EMBC.2012.6347250.

PMID:
23367185
13.

Clustering with position-specific constraints on variance: applying redescending M-estimators to label-free LC-MS data analysis.

Frühwirth R, Mani DR, Pyne S.

BMC Bioinformatics. 2011 Aug 31;12:358. doi: 10.1186/1471-2105-12-358.

14.

imzML: Imaging Mass Spectrometry Markup Language: A common data format for mass spectrometry imaging.

Römpp A, Schramm T, Hester A, Klinkert I, Both JP, Heeren RM, Stöckli M, Spengler B.

Methods Mol Biol. 2011;696:205-24. doi: 10.1007/978-1-60761-987-1_12.

PMID:
21063949
15.

Multivariate denoising methods combining wavelets and principal component analysis for mass spectrometry data.

Mostacci E, Truntzer C, Cardot H, Ducoroy P.

Proteomics. 2010 Jul;10(14):2564-72. doi: 10.1002/pmic.200900185.

PMID:
20432481
16.

Structured covariance principal component analysis for real-time onsite feature extraction and dimensionality reduction in hyperspectral imaging.

Zabalza J, Ren J, Ren J, Liu Z, Marshall S.

Appl Opt. 2014 Jul 10;53(20):4440-9. doi: 10.1364/AO.53.004440.

PMID:
25090063
17.

Strategies for reducing large fMRI data sets for independent component analysis.

Wang Z, Wang J, Calhoun V, Rao H, Detre JA, Childress AR.

Magn Reson Imaging. 2006 Jun;24(5):591-6. Epub 2006 Feb 20.

PMID:
16735180
18.

Sequential projection pursuit principal component analysis--dealing with missing data associated with new -omics technologies.

Webb-Robertson BJ, Matzke MM, Metz TO, McDermott JE, Walker H, Rodland KD, Pounds JG, Waters KM.

Biotechniques. 2013 Mar;54(3):165-8. doi: 10.2144/000113978.

19.

Concise representation of mass spectrometry images by probabilistic latent semantic analysis.

Hanselmann M, Kirchner M, Renard BY, Amstalden ER, Glunde K, Heeren RM, Hamprecht FA.

Anal Chem. 2008 Dec 15;80(24):9649-58. doi: 10.1021/ac801303x.

PMID:
18989936
20.

Matrix-assisted laser desorption/ionisation mass spectrometry imaging of lipids in rat brain tissue with integrated unsupervised and supervised multivariant statistical analysis.

Trim PJ, Atkinson SJ, Princivalle AP, Marshall PS, West A, Clench MR.

Rapid Commun Mass Spectrom. 2008 May;22(10):1503-9. doi: 10.1002/rcm.3498.

PMID:
18421763

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