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Deep sequencing from hen1 mutants to identify small RNA 3' modifications.

Zhai J, Meyers BC.

Cold Spring Harb Symp Quant Biol. 2012;77:213-9. doi: 10.1101/sqb.2013.77.014779. Epub 2013 Feb 7. Review.


Plant microRNAs display differential 3' truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species.

Zhai J, Zhao Y, Simon SA, Huang S, Petsch K, Arikit S, Pillay M, Ji L, Xie M, Cao X, Yu B, Timmermans M, Yang B, Chen X, Meyers BC.

Plant Cell. 2013 Jul;25(7):2417-28. doi: 10.1105/tpc.113.114603. Epub 2013 Jul 9.


Two cap-binding proteins CBP20 and CBP80 are involved in processing primary MicroRNAs.

Kim S, Yang JY, Xu J, Jang IC, Prigge MJ, Chua NH.

Plant Cell Physiol. 2008 Nov;49(11):1634-44. doi: 10.1093/pcp/pcn146. Epub 2008 Sep 30.


The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation.

Zhao Y, Yu Y, Zhai J, Ramachandran V, Dinh TT, Meyers BC, Mo B, Chen X.

Curr Biol. 2012 Apr 24;22(8):689-94. doi: 10.1016/j.cub.2012.02.051. Epub 2012 Mar 29.


Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing.

Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS.

BMC Plant Biol. 2011 Jan 10;11:5. doi: 10.1186/1471-2229-11-5.


Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?

Ruwe H, Schmitz-Linneweber C.

Nucleic Acids Res. 2012 Apr;40(7):3106-16. doi: 10.1093/nar/gkr1138. Epub 2011 Dec 1.


The role of decapping proteins in the miRNA accumulation in Arabidopsis thaliana.

Motomura K, Le QT, Kumakura N, Fukaya T, Takeda A, Watanabe Y.

RNA Biol. 2012 May;9(5):644-52. doi: 10.4161/rna.19877. Epub 2012 May 1.


Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis.

Yang X, Zhang H, Li L.

Plant J. 2012 May;70(3):421-31. doi: 10.1111/j.1365-313X.2011.04882.x. Epub 2012 Jan 16.


Post-transcriptional control of miRNA abundance in Arabidopsis.

Ren G, Yu B.

Plant Signal Behav. 2012 Nov;7(11):1443-6. doi: 10.4161/psb.21956. Epub 2012 Sep 7. Review.


Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology.

Zhang B, Xie D, Jin Z.

J Integr Plant Biol. 2012 Feb;54(2):73-86. doi: 10.1111/j.1744-7909.2012.01098.x. Erratum in: J Integr Plant Biol. 2012 Mar;54(3):207.


siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis.

Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, Ding SW, Meyers BC, Vaucheret H, Chen X.

Nucleic Acids Res. 2010 Sep;38(17):5844-50. doi: 10.1093/nar/gkq348. Epub 2010 May 6.


Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing.

Wan LC, Wang F, Guo X, Lu S, Qiu Z, Zhao Y, Zhang H, Lin J.

BMC Plant Biol. 2012 Aug 15;12:146. doi: 10.1186/1471-2229-12-146.


A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159.

Bologna NG, Mateos JL, Bresso EG, Palatnik JF.

EMBO J. 2009 Dec 2;28(23):3646-56. doi: 10.1038/emboj.2009.292. Epub 2009 Oct 8.


Mechanisms that impact microRNA stability in plants.

Zhao Y, Mo B, Chen X.

RNA Biol. 2012 Oct;9(10):1218-23. doi: 10.4161/rna.22034. Epub 2012 Sep 20.


MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region.

Mallory AC, Reinhart BJ, Jones-Rhoades MW, Tang G, Zamore PD, Barton MK, Bartel DP.

EMBO J. 2004 Aug 18;23(16):3356-64. Epub 2004 Jul 29.


miRNA processing turned upside down.

Schwab R, Voinnet O.

EMBO J. 2009 Dec 2;28(23):3633-4. doi: 10.1038/emboj.2009.334.


Specific impact of tobamovirus infection on the Arabidopsis small RNA profile.

Hu Q, Hollunder J, Niehl A, Kørner CJ, Gereige D, Windels D, Arnold A, Kuiper M, Vazquez F, Pooggin M, Heinlein M.

PLoS One. 2011 May 10;6(5):e19549. doi: 10.1371/journal.pone.0019549.


Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.

Kim B, Yu HJ, Park SG, Shin JY, Oh M, Kim N, Mun JH.

BMC Plant Biol. 2012 Nov 19;12:218. doi: 10.1186/1471-2229-12-218.

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