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Items: 1 to 20 of 102


Identification of human HK genes and gene expression regulation study in cancer from transcriptomics data analysis.

Chen M, Xiao J, Zhang Z, Liu J, Wu J, Yu J.

PLoS One. 2013;8(1):e54082. doi: 10.1371/journal.pone.0054082. Epub 2013 Jan 31.


How many human genes can be defined as housekeeping with current expression data?

Zhu J, He F, Song S, Wang J, Yu J.

BMC Genomics. 2008 Apr 16;9:172. doi: 10.1186/1471-2164-9-172.


Identification and analysis of house-keeping and tissue-specific genes based on RNA-seq data sets across 15 mouse tissues.

Zeng J, Liu S, Zhao Y, Tan X, Aljohi HA, Liu W, Hu S.

Gene. 2016 Jan 15;576(1 Pt 3):560-70. doi: 10.1016/j.gene.2015.11.003. Epub 2015 Nov 6.


Partitioning the human transcriptome using HKera, a novel classifier of housekeeping and tissue-specific genes.

Chiang AW, Shaw GT, Hwang MJ.

PLoS One. 2013 Dec 20;8(12):e83040. doi: 10.1371/journal.pone.0083040. eCollection 2013.


Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues.

Aouacheria A, Navratil V, Barthelaix A, Mouchiroud D, Gautier C.

BMC Genomics. 2006 Apr 26;7:94.


Technology evaluation: SAGE, Genzyme molecular oncology.

Bartlett J.

Curr Opin Mol Ther. 2001 Feb;3(1):85-96. Review.


RNA-Seq Atlas--a reference database for gene expression profiling in normal tissue by next-generation sequencing.

Krupp M, Marquardt JU, Sahin U, Galle PR, Castle J, Teufel A.

Bioinformatics. 2012 Apr 15;28(8):1184-5. doi: 10.1093/bioinformatics/bts084. Epub 2012 Feb 17.


Next-generation tag sequencing for cancer gene expression profiling.

Morrissy AS, Morin RD, Delaney A, Zeng T, McDonald H, Jones S, Zhao Y, Hirst M, Marra MA.

Genome Res. 2009 Oct;19(10):1825-35. doi: 10.1101/gr.094482.109. Epub 2009 Jun 18.


Analysis of gene expression in prostate cancer epithelial and interstitial stromal cells using laser capture microdissection.

Gregg JL, Brown KE, Mintz EM, Piontkivska H, Fraizer GC.

BMC Cancer. 2010 Apr 28;10:165. doi: 10.1186/1471-2407-10-165.


Interpreting expression profiles of cancers by genome-wide survey of breadth of expression in normal tissues.

Ge X, Yamamoto S, Tsutsumi S, Midorikawa Y, Ihara S, Wang SM, Aburatani H.

Genomics. 2005 Aug;86(2):127-41.


Identification of novel transcripts deregulated in buccal cancer by RNA-seq.

Sajnani MR, Patel AK, Bhatt VD, Tripathi AK, Ahir VB, Shankar V, Shah S, Shah TM, Koringa PG, Jakhesara SJ, Joshi CG.

Gene. 2012 Oct 10;507(2):152-8. doi: 10.1016/j.gene.2012.07.036. Epub 2012 Jul 27.


Do housekeeping genes exist?

Zhang Y, Li D, Sun B.

PLoS One. 2015 May 13;10(5):e0123691. doi: 10.1371/journal.pone.0123691. eCollection 2015.


RNA-Seq quantification of the human small airway epithelium transcriptome.

Hackett NR, Butler MW, Shaykhiev R, Salit J, Omberg L, Rodriguez-Flores JL, Mezey JG, Strulovici-Barel Y, Wang G, Didon L, Crystal RG.

BMC Genomics. 2012 Feb 29;13:82. doi: 10.1186/1471-2164-13-82.


RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene.

van Delft J, Gaj S, Lienhard M, Albrecht MW, Kirpiy A, Brauers K, Claessen S, Lizarraga D, Lehrach H, Herwig R, Kleinjans J.

Toxicol Sci. 2012 Dec;130(2):427-39. doi: 10.1093/toxsci/kfs250. Epub 2012 Aug 13.


Microarray gene expression profiling and analysis in renal cell carcinoma.

Liou LS, Shi T, Duan ZH, Sadhukhan P, Der SD, Novick AA, Hissong J, Skacel M, Almasan A, DiDonato JA.

BMC Urol. 2004 Jun 22;4:9.


Illumina whole-genome complementary DNA-mediated annealing, selection, extension and ligation platform: assessing its performance in formalin-fixed, paraffin-embedded samples and identifying invasion pattern-related genes in oral squamous cell carcinoma.

Loudig O, Brandwein-Gensler M, Kim RS, Lin J, Isayeva T, Liu C, Segall JE, Kenny PA, Prystowsky MB.

Hum Pathol. 2011 Dec;42(12):1911-22. doi: 10.1016/j.humpath.2011.02.011. Epub 2011 Jun 17.


Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations.

Tuch BB, Laborde RR, Xu X, Gu J, Chung CB, Monighetti CK, Stanley SJ, Olsen KD, Kasperbauer JL, Moore EJ, Broomer AJ, Tan R, Brzoska PM, Muller MW, Siddiqui AS, Asmann YW, Sun Y, Kuersten S, Barker MA, De La Vega FM, Smith DI.

PLoS One. 2010 Feb 19;5(2):e9317. doi: 10.1371/journal.pone.0009317.


Towards reliable isoform quantification using RNA-SEQ data.

Howard BE, Heber S.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S6. doi: 10.1186/1471-2105-11-S3-S6.


Tissue-wide expression profiling using cDNA subtraction and microarrays to identify tumor-specific genes.

Amatschek S, Koenig U, Auer H, Steinlein P, Pacher M, Gruenfelder A, Dekan G, Vogl S, Kubista E, Heider KH, Stratowa C, Schreiber M, Sommergruber W.

Cancer Res. 2004 Feb 1;64(3):844-56.


Semaphorin-plexin signalling genes associated with human breast tumourigenesis.

Gabrovska PN, Smith RA, Tiang T, Weinstein SR, Haupt LM, Griffiths LR.

Gene. 2011 Dec 10;489(2):63-9. doi: 10.1016/j.gene.2011.08.024. Epub 2011 Sep 2.


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