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Items: 1 to 20 of 99

1.

Looking for a promoter in 3D.

Svetlov V, Nudler E.

Nat Struct Mol Biol. 2013 Feb;20(2):141-2. doi: 10.1038/nsmb.2498. No abstract available.

PMID:
23381630
2.

The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion.

Wang F, Redding S, Finkelstein IJ, Gorman J, Reichman DR, Greene EC.

Nat Struct Mol Biol. 2013 Feb;20(2):174-81. doi: 10.1038/nsmb.2472. Epub 2012 Dec 23.

3.

Views of transcription initiation.

Young BA, Gruber TM, Gross CA.

Cell. 2002 May 17;109(4):417-20. Review.

5.

Domain 1.1 of the sigma(70) subunit of Escherichia coli RNA polymerase modulates the formation of stable polymerase/promoter complexes.

Vuthoori S, Bowers CW, McCracken A, Dombroski AJ, Hinton DM.

J Mol Biol. 2001 Jun 8;309(3):561-72.

PMID:
11397080
6.

Separate contributions of UhpA and CAP to activation of transcription of the uhpT promoter of Escherichia coli.

Olekhnovich IN, Dahl JL, Kadner RJ.

J Mol Biol. 1999 Oct 8;292(5):973-86.

PMID:
10512697
8.

In vitro interactions of Pseudomonas RNA polymerases with tac and RNA I promoters.

Fujita M, Amemura A.

Biosci Biotechnol Biochem. 1992 Oct;56(10):1644-8.

10.

Use of RNA polymerase molecular beacon assay to measure RNA polymerase interactions with model promoter fragments.

Mekler V, Severinov K.

Methods Mol Biol. 2015;1276:199-210. doi: 10.1007/978-1-4939-2392-2_11.

PMID:
25665565
11.

Beta subunit residues 186-433 and 436-445 are commonly used by Esigma54 and Esigma70 RNA polymerase for open promoter complex formation.

Wigneshweraraj SR, Nechaev S, Severinov K, Buck M.

J Mol Biol. 2002 Jun 21;319(5):1067-83.

PMID:
12079348
12.

Modeling promoter search by E. coli RNA polymerase: one-dimensional diffusion in a sequence-dependent energy landscape.

Weindl J, Dawy Z, Hanus P, Zech J, Mueller JC.

J Theor Biol. 2009 Aug 7;259(3):628-34. doi: 10.1016/j.jtbi.2009.05.006. Epub 2009 May 20.

PMID:
19463831
13.
14.

Aromatic amino acids in region 2.3 of Escherichia coli sigma 70 participate collectively in the formation of an RNA polymerase-promoter open complex.

Panaghie G, Aiyar SE, Bobb KL, Hayward RS, de Haseth PL.

J Mol Biol. 2000 Jun 23;299(5):1217-30.

PMID:
10873447
15.

The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an "extended minus 10" promoter.

Kumar A, Malloch RA, Fujita N, Smillie DA, Ishihama A, Hayward RS.

J Mol Biol. 1993 Jul 20;232(2):406-18.

PMID:
8345519
16.

Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation.

Vrentas CE, Gaal T, Berkmen MB, Rutherford ST, Haugen SP, Vassylyev DG, Ross W, Gourse RL.

J Mol Biol. 2008 Mar 21;377(2):551-64. doi: 10.1016/j.jmb.2008.01.042. Epub 2008 Jan 26. Erratum in: J Mol Biol. 2008 Jun 20;379(5):1130.

18.

Mutational analysis of structure-function relationship of RNA polymerase in Escherichia coli.

Jin DJ, Zhou YN.

Methods Enzymol. 1996;273:300-19. Review. No abstract available.

PMID:
8791620
19.

Quantitative parameters for promoter clearance.

Hsu LM.

Methods Enzymol. 1996;273:59-71. Review. No abstract available.

PMID:
8791599
20.

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