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Items: 1 to 20 of 115

1.

Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities.

Bokulich NA, Mills DA.

Appl Environ Microbiol. 2013 Apr;79(8):2519-26. doi: 10.1128/AEM.03870-12. Epub 2013 Feb 1.

2.

New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities.

Ihrmark K, Bödeker IT, Cruz-Martinez K, Friberg H, Kubartova A, Schenck J, Strid Y, Stenlid J, Brandström-Durling M, Clemmensen KE, Lindahl BD.

FEMS Microbiol Ecol. 2012 Dec;82(3):666-77. doi: 10.1111/j.1574-6941.2012.01437.x. Epub 2012 Jul 27.

3.

Evaluation of different PCR primers for denaturing gradient gel electrophoresis (DGGE) analysis of fungal community structure in traditional fermentation starters used for Hong Qu glutinous rice wine.

Lv XC, Jiang YJ, Liu J, Guo WL, Liu ZB, Zhang W, Rao PF, Ni L.

Int J Food Microbiol. 2017 Aug 16;255:58-65. doi: 10.1016/j.ijfoodmicro.2017.05.010. Epub 2017 May 15.

PMID:
28595086
4.

Comparison and validation of some ITS primer pairs useful for fungal metabarcoding studies.

Op De Beeck M, Lievens B, Busschaert P, Declerck S, Vangronsveld J, Colpaert JV.

PLoS One. 2014 Jun 16;9(6):e97629. doi: 10.1371/journal.pone.0097629. eCollection 2014.

5.
6.

A new fungal large subunit ribosomal RNA primer for high-throughput sequencing surveys.

Mueller RC, Gallegos-Graves LV, Kuske CR.

FEMS Microbiol Ecol. 2016 Feb;92(2). pii: fiv153. doi: 10.1093/femsec/fiv153. Epub 2015 Dec 9.

PMID:
26656064
7.

Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing.

Taylor DL, Walters WA, Lennon NJ, Bochicchio J, Krohn A, Caporaso JG, Pennanen T.

Appl Environ Microbiol. 2016 Nov 21;82(24):7217-7226. Print 2016 Dec 15.

8.

Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR.

Chemidlin Prévost-Bouré N, Christen R, Dequiedt S, Mougel C, Lelièvre M, Jolivet C, Shahbazkia HR, Guillou L, Arrouays D, Ranjard L.

PLoS One. 2011;6(9):e24166. doi: 10.1371/journal.pone.0024166. Epub 2011 Sep 8.

9.

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies.

Nilsson RH, Ryberg M, Abarenkov K, Sjökvist E, Kristiansson E.

FEMS Microbiol Lett. 2009 Jul;296(1):97-101. doi: 10.1111/j.1574-6968.2009.01618.x. Epub 2009 May 1.

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12.

Evaluation of PCR primers for denaturing gradient gel electrophoresis analysis of fungal communities in compost.

Marshall MN, Cocolin L, Mills DA, VanderGheynst JS.

J Appl Microbiol. 2003;95(5):934-48.

14.

Design and Evaluation of Illumina MiSeq-Compatible, 18S rRNA Gene-Specific Primers for Improved Characterization of Mixed Phototrophic Communities.

Bradley IM, Pinto AJ, Guest JS.

Appl Environ Microbiol. 2016 Sep 16;82(19):5878-91. doi: 10.1128/AEM.01630-16. Print 2016 Oct 1.

15.

Sample Preparation for Fungal Community Analysis by High-Throughput Sequencing of Barcode Amplicons.

Clemmensen KE, Ihrmark K, Durling MB, Lindahl BD.

Methods Mol Biol. 2016;1399:61-88. doi: 10.1007/978-1-4939-3369-3_4.

PMID:
26791497
16.

Evaluation of fungal and yeast diversity in Slovakian wine-related microbial communities.

Brežná B, Zenišová K, Chovanová K, Chebeňová V, Kraková L, Kuchta T, Pangallo D.

Antonie Van Leeuwenhoek. 2010 Nov;98(4):519-29. doi: 10.1007/s10482-010-9469-6. Epub 2010 Jun 17.

PMID:
20556654
17.

Fungal community analysis by high-throughput sequencing of amplified markers--a user's guide.

Lindahl BD, Nilsson RH, Tedersoo L, Abarenkov K, Carlsen T, Kjøller R, Kõljalg U, Pennanen T, Rosendahl S, Stenlid J, Kauserud H.

New Phytol. 2013 Jul;199(1):288-99. doi: 10.1111/nph.12243. Epub 2013 Mar 28. Review.

18.

PCR primers to study the diversity of expressed fungal genes encoding lignocellulolytic enzymes in soils using high-throughput sequencing.

Barbi F, Bragalini C, Vallon L, Prudent E, Dubost A, Fraissinet-Tachet L, Marmeisse R, Luis P.

PLoS One. 2014 Dec 29;9(12):e116264. doi: 10.1371/journal.pone.0116264. eCollection 2014.

19.

Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis.

van Elsas JD, Duarte GF, Keijzer-Wolters A, Smit E.

J Microbiol Methods. 2000 Dec 15;43(2):133-51.

PMID:
11121612
20.

Amplification of soil fungal community DNA using the ITS86F and ITS4 primers.

Vancov T, Keen B.

FEMS Microbiol Lett. 2009 Jul;296(1):91-6. doi: 10.1111/j.1574-6968.2009.01621.x. Epub 2009 May 11.

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