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Items: 1 to 20 of 89

1.

Gene copy-number alterations: a cost-benefit analysis.

Tang YC, Amon A.

Cell. 2013 Jan 31;152(3):394-405. doi: 10.1016/j.cell.2012.11.043. Review.

2.

Aneuploid proliferation defects in yeast are not driven by copy number changes of a few dosage-sensitive genes.

Bonney ME, Moriya H, Amon A.

Genes Dev. 2015 May 1;29(9):898-903. doi: 10.1101/gad.261743.115.

3.

The use of ultra-dense array CGH analysis for the discovery of micro-copy number alterations and gene fusions in the cancer genome.

Przybytkowski E, Ferrario C, Basik M.

BMC Med Genomics. 2011 Jan 27;4:16. doi: 10.1186/1755-8794-4-16.

4.

Insights from paleogenomic and population studies into the consequences of dosage sensitive gene expression in plants.

Birchler JA.

Curr Opin Plant Biol. 2012 Nov;15(5):544-8. doi: 10.1016/j.pbi.2012.08.005. Epub 2012 Aug 30. Review.

PMID:
22939251
5.

Are copy number variants associated with adolescent idiopathic scoliosis?

Buchan JG, Alvarado DM, Haller G, Aferol H, Miller NH, Dobbs MB, Gurnett CA.

Clin Orthop Relat Res. 2014 Oct;472(10):3216-25. doi: 10.1007/s11999-014-3766-8. Epub 2014 Jul 9.

6.

Effects of aneuploidy on gene expression: implications for cancer.

Dürrbaum M, Storchová Z.

FEBS J. 2016 Mar;283(5):791-802. doi: 10.1111/febs.13591. Epub 2015 Dec 8. Review.

7.

Distinguishing somatic and germline copy number events in cancer patient DNA hybridized to whole-genome SNP genotyping arrays.

Ha G, Shah S.

Methods Mol Biol. 2013;973:355-72. doi: 10.1007/978-1-62703-281-0_22.

PMID:
23412801
8.

Aneuploidy and chromosomal instability: a vicious cycle driving cellular evolution and cancer genome chaos.

Potapova TA, Zhu J, Li R.

Cancer Metastasis Rev. 2013 Dec;32(3-4):377-89. doi: 10.1007/s10555-013-9436-6. Review.

9.

Consequences of Aneuploidy in Cancer: Transcriptome and Beyond.

Dürrbaum M, Storchová Z.

Recent Results Cancer Res. 2015;200:195-224. doi: 10.1007/978-3-319-20291-4_9. Review.

PMID:
26376878
10.

The shaping and functional consequences of the dosage effect landscape in multiple myeloma.

Samur MK, Shah PK, Wang X, Minvielle S, Magrangeas F, Avet-Loiseau H, Munshi NC, Li C.

BMC Genomics. 2013 Oct 2;14:672. doi: 10.1186/1471-2164-14-672.

11.

Assembly of microarrays for genome-wide measurement of DNA copy number.

Snijders AM, Nowak N, Segraves R, Blackwood S, Brown N, Conroy J, Hamilton G, Hindle AK, Huey B, Kimura K, Law S, Myambo K, Palmer J, Ylstra B, Yue JP, Gray JW, Jain AN, Pinkel D, Albertson DG.

Nat Genet. 2001 Nov;29(3):263-4.

PMID:
11687795
12.

DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data.

Salari K, Tibshirani R, Pollack JR.

Bioinformatics. 2010 Feb 1;26(3):414-6. doi: 10.1093/bioinformatics/btp702. Epub 2009 Dec 22.

13.

Genome-wide analysis of DNA copy-number changes using cDNA microarrays.

Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO.

Nat Genet. 1999 Sep;23(1):41-6.

PMID:
10471496
14.

Landscape of somatic allelic imbalances and copy number alterations in human lung carcinoma.

Staaf J, Isaksson S, Karlsson A, Jönsson M, Johansson L, Jönsson P, Botling J, Micke P, Baldetorp B, Planck M.

Int J Cancer. 2013 May 1;132(9):2020-31. doi: 10.1002/ijc.27879. Epub 2012 Oct 20.

15.

DNA copy number alterations, gene expression changes and disease-free survival in patients with colorectal cancer: a 10 year follow-up.

Bigagli E, De Filippo C, Castagnini C, Toti S, Acquadro F, Giudici F, Fazi M, Dolara P, Messerini L, Tonelli F, Luceri C.

Cell Oncol (Dordr). 2016 Dec;39(6):545-558. Epub 2016 Oct 5.

PMID:
27709558
16.

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Pinkel D, Segraves R, Sudar D, Clark S, Poole I, Kowbel D, Collins C, Kuo WL, Chen C, Zhai Y, Dairkee SH, Ljung BM, Gray JW, Albertson DG.

Nat Genet. 1998 Oct;20(2):207-11.

PMID:
9771718
17.

Use of the MLPA assay in the molecular diagnosis of gene copy number alterations in human genetic diseases.

Stuppia L, Antonucci I, Palka G, Gatta V.

Int J Mol Sci. 2012;13(3):3245-76. doi: 10.3390/ijms13033245. Epub 2012 Mar 8. Review.

18.

Somatic Copy Number Alterations at Oncogenic Loci Show Diverse Correlations with Gene Expression.

Roszik J, Wu CJ, Siroy AE, Lazar AJ, Davies MA, Woodman SE, Kwong LN.

Sci Rep. 2016 Jan 20;6:19649. doi: 10.1038/srep19649.

19.

Aneuploidy and copy number breakpoints in the genome of lager yeasts mapped by microarray hybridisation.

Bond U, Neal C, Donnelly D, James TC.

Curr Genet. 2004 Jun;45(6):360-70. Epub 2004 Apr 21.

PMID:
15103502
20.

The Gene Balance Hypothesis: dosage effects in plants.

Birchler JA, Veitia RA.

Methods Mol Biol. 2014;1112:25-32. doi: 10.1007/978-1-62703-773-0_2. Review.

PMID:
24478005

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