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Items: 1 to 20 of 129


Overview of molecular typing methods for outbreak detection and epidemiological surveillance.

Sabat AJ, Budimir A, Nashev D, Sá-Leão R, van Dijl Jm, Laurent F, Grundmann H, Friedrich AW; ESCMID Study Group of Epidemiological Markers (ESGEM).

Euro Surveill. 2013 Jan 24;18(4):20380. Review.


Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology.

Salipante SJ, SenGupta DJ, Cummings LA, Land TA, Hoogestraat DR, Cookson BT.

J Clin Microbiol. 2015 Apr;53(4):1072-9. doi: 10.1128/JCM.03385-14. Epub 2015 Jan 28.


Characterization of Foodborne Outbreaks of Salmonella enterica Serovar Enteritidis with Whole-Genome Sequencing Single Nucleotide Polymorphism-Based Analysis for Surveillance and Outbreak Detection.

Taylor AJ, Lappi V, Wolfgang WJ, Lapierre P, Palumbo MJ, Medus C, Boxrud D.

J Clin Microbiol. 2015 Oct;53(10):3334-40. doi: 10.1128/JCM.01280-15. Epub 2015 Aug 12.


Ion torrent personal genome machine sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information.

Vogel U, Szczepanowski R, Claus H, Jünemann S, Prior K, Harmsen D.

J Clin Microbiol. 2012 Jun;50(6):1889-94. doi: 10.1128/JCM.00038-12. Epub 2012 Mar 29.


Comparative and library epidemiological typing systems: outbreak investigations versus surveillance systems.

Struelens MJ, De Gheldre Y, Deplano A.

Infect Control Hosp Epidemiol. 1998 Aug;19(8):565-9.


Outbreak analysis and typing of MRSA isolates by automated repetitive-sequence-based PCR in a region with multiple strain types causing epidemics.

Hirvonen JJ, Pasanen T, Tissari P, Salmenlinna S, Vuopio J, Kaukoranta SS.

Eur J Clin Microbiol Infect Dis. 2012 Nov;31(11):2935-42. doi: 10.1007/s10096-012-1644-4. Epub 2012 May 27.


[Future prospects of molecular epidemiology in tuberculosis].

Matsumoto T, Iwamoto T.

Kekkaku. 2009 Dec;84(12):783-4. Japanese.


Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing.

Stucki D, Ballif M, Bodmer T, Coscolla M, Maurer AM, Droz S, Butz C, Borrell S, Längle C, Feldmann J, Furrer H, Mordasini C, Helbling P, Rieder HL, Egger M, Gagneux S, Fenner L.

J Infect Dis. 2015 Apr 15;211(8):1306-16. doi: 10.1093/infdis/jiu601. Epub 2014 Oct 30.


Current application and future perspectives of molecular typing methods to study Clostridium difficile infections.

Knetsch CW, Lawley TD, Hensgens MP, Corver J, Wilcox MW, Kuijper EJ.

Euro Surveill. 2013 Jan 24;18(4):20381. Review.


Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli.

Joensen KG, Scheutz F, Lund O, Hasman H, Kaas RS, Nielsen EM, Aarestrup FM.

J Clin Microbiol. 2014 May;52(5):1501-10. doi: 10.1128/JCM.03617-13. Epub 2014 Feb 26.


Comparison of traditional and molecular methods of typing isolates of Staphylococcus aureus.

Tenover FC, Arbeit R, Archer G, Biddle J, Byrne S, Goering R, Hancock G, Hébert GA, Hill B, Hollis R, et al.

J Clin Microbiol. 1994 Feb;32(2):407-15.


Fighting outbreaks with bacterial genomics: case review and workflow proposal.

Cheung MK, Kwan HS.

Public Health Genomics. 2012;15(6):341-51. doi: 10.1159/000342770. Epub 2012 Oct 3. Review.


Integration of whole-genome sequencing into infection control practices: the potential and the hurdles.

Robilotti E, Kamboj M.

J Clin Microbiol. 2015 Apr;53(4):1054-5. doi: 10.1128/JCM.00349-15. Epub 2015 Feb 11.


[Molecular epidemiology of infectious diseases: analytical methods and results interpretation].

Sammarco ML, Ripabelli G, Tamburro M.

Ann Ig. 2014 Jan-Feb;26(1):10-45. doi: 10.7416/ai.2014.1956. Italian.


Whole genome sequencing: a new paradigm in the surveillance and control of human tuberculosis.

Hasnain SE, O'Toole RF, Grover S, Ehtesham NZ.

Tuberculosis (Edinb). 2015 Mar;95(2):91-4. doi: 10.1016/ Epub 2014 Dec 31. Review.


Comparison of automated repetitive-sequence-based polymerase chain reaction and spa typing versus pulsed-field gel electrophoresis for molecular typing of methicillin-resistant Staphylococcus aureus.

Church DL, Chow BL, Lloyd T, Gregson DB.

Diagn Microbiol Infect Dis. 2011 Jan;69(1):30-7. doi: 10.1016/j.diagmicrobio.2010.09.010.


Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.

Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM.

PLoS One. 2014 Feb 4;9(2):e87991. doi: 10.1371/journal.pone.0087991. eCollection 2014.


Epidemiological typing of methicillin-resistant Staphylococcus aureus (MRSA): spa typing versus pulsed-field gel electrophoresis.

Melin S, Melin S, Haeggman S, Melin S, Haeggman S, Olsson-Liljequist B, Sjölund M, Nilsson PA, Isaksson B, Löfgren S, Matussek A.

Scand J Infect Dis. 2009;41(6-7):433-9. doi: 10.1080/00365540902962749.


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