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Items: 1 to 20 of 1318

1.
2.

SNP calling by sequencing pooled samples.

Raineri E, Ferretti L, Esteve-Codina A, Nevado B, Heath S, Pérez-Enciso M.

BMC Bioinformatics. 2012 Sep 20;13:239. doi: 10.1186/1471-2105-13-239.

3.

Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.

Gautier M, Foucaud J, Gharbi K, Cézard T, Galan M, Loiseau A, Thomson M, Pudlo P, Kerdelhué C, Estoup A.

Mol Ecol. 2013 Jul;22(14):3766-79. doi: 10.1111/mec.12360. Epub 2013 Jun 4.

PMID:
23730833
4.

A new expectation-maximization statistical test for case-control association studies considering rare variants obtained by high-throughput sequencing.

Gordon D, Finch SJ, De La Vega FM.

Hum Hered. 2011;71(2):113-25. doi: 10.1159/000325590. Epub 2011 Jul 6. Erratum in: Hum Hered. 2011;72(1):53. De La Vega, Francisco [corrected to De La Vega, Francisco M].

PMID:
21734402
5.

Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms.

Greminger MP, Stölting KN, Nater A, Goossens B, Arora N, Bruggmann R, Patrignani A, Nussberger B, Sharma R, Kraus RH, Ambu LN, Singleton I, Chikhi L, van Schaik CP, Krützen M.

BMC Genomics. 2014 Jan 10;15:16. doi: 10.1186/1471-2164-15-16.

6.

An evaluation of allele frequency estimation accuracy using pooled sequencing data.

Guo Y, Cai Q, Li C, Li J, Courtney R, Zheng W, Long J.

Int J Comput Biol Drug Des. 2013;6(4):279-93. doi: 10.1504/IJCBDD.2013.056709. Epub 2013 Sep 30.

7.

Cost-effective genome-wide estimation of allele frequencies from pooled DNA in Atlantic salmon (Salmo salar L.).

Ozerov M, Vasemägi A, Wennevik V, Niemelä E, Prusov S, Kent M, Vähä JP.

BMC Genomics. 2013 Jan 16;14:12. doi: 10.1186/1471-2164-14-12.

8.

Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing.

Ramos E, Levinson BT, Chasnoff S, Hughes A, Young AL, Thornton K, Li A, Vallania FL, Province M, Druley TE.

BMC Genomics. 2012 Dec 6;13:683. doi: 10.1186/1471-2164-13-683.

9.

Pooled-DNA Sequencing for Elucidating New Genomic Risk Factors, Rare Variants Underlying Alzheimer's Disease.

Jin SC, Benitez BA, Deming Y, Cruchaga C.

Methods Mol Biol. 2016;1303:299-314. doi: 10.1007/978-1-4939-2627-5_18.

PMID:
26235075
10.

PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies.

Liao P, Satten GA, Hu YJ.

Genet Epidemiol. 2017 Jul;41(5):375-387. doi: 10.1002/gepi.22048. Epub 2017 May 31.

11.

Detection of rare genomic variants from pooled sequencing using SPLINTER.

Vallania F, Ramos E, Cresci S, Mitra RD, Druley TE.

J Vis Exp. 2012 Jun 23;(64). pii: 3943. doi: 10.3791/3943.

12.

Design of association studies with pooled or un-pooled next-generation sequencing data.

Kim SY, Li Y, Guo Y, Li R, Holmkvist J, Hansen T, Pedersen O, Wang J, Nielsen R.

Genet Epidemiol. 2010 Jul;34(5):479-91. doi: 10.1002/gepi.20501.

13.

Efficient identification of rare variants in large populations: deep re-sequencing the CRP locus in the CARDIA study.

Chen CT, McDavid AN, Kahsai OJ, Zebari AS, Carlson CS.

Nucleic Acids Res. 2013 Apr;41(7):e85. doi: 10.1093/nar/gkt092. Epub 2013 Feb 13.

14.

Estimating allele frequency from next-generation sequencing of pooled mitochondrial DNA samples.

Wang T, Pradhan K, Ye K, Wong LJ, Rohan TE.

Front Genet. 2011 Aug 17;2:51. doi: 10.3389/fgene.2011.00051. eCollection 2011.

15.

A statistical method for the detection of variants from next-generation resequencing of DNA pools.

Bansal V.

Bioinformatics. 2010 Jun 15;26(12):i318-24. doi: 10.1093/bioinformatics/btq214. Erratum in: Bioinformatics. 2016 Oct 15;32(20):3213.

16.

Analysis and optimal design for association studies using next-generation sequencing with case-control pools.

Liang WE, Thomas DC, Conti DV.

Genet Epidemiol. 2012 Dec;36(8):870-81. doi: 10.1002/gepi.21681. Epub 2012 Sep 12.

17.

Estimation of allele frequency and association mapping using next-generation sequencing data.

Kim SY, Lohmueller KE, Albrechtsen A, Li Y, Korneliussen T, Tian G, Grarup N, Jiang T, Andersen G, Witte D, Jorgensen T, Hansen T, Pedersen O, Wang J, Nielsen R.

BMC Bioinformatics. 2011 Jun 11;12:231. doi: 10.1186/1471-2105-12-231.

18.

Evaluation of allele frequency estimation using pooled sequencing data simulation.

Guo Y, Samuels DC, Li J, Clark T, Li CI, Shyr Y.

ScientificWorldJournal. 2013;2013:895496. doi: 10.1155/2013/895496. Epub 2013 Feb 7.

19.

Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies.

Hao K, Chudin E, McElwee J, Schadt EE.

BMC Genet. 2009 Jun 16;10:27. doi: 10.1186/1471-2156-10-27.

20.

Rare variants in TMEM132D in a case-control sample for panic disorder.

Quast C, Altmann A, Weber P, Arloth J, Bader D, Heck A, Pfister H, Müller-Myhsok B, Erhardt A, Binder EB.

Am J Med Genet B Neuropsychiatr Genet. 2012 Dec;159B(8):896-907. doi: 10.1002/ajmg.b.32096. Epub 2012 Aug 22.

PMID:
22911938

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