Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 89


Direct sequencing and RipSeq interpretation as a tool for identification of polymicrobial infections.

Wolff TY, Eickhardt S, Björnsdottir MK, Moser C, Bjarnsholt T, Høiby N, Thomsen TR.

J Clin Microbiol. 2013 Apr;51(4):1281-4. doi: 10.1128/JCM.00190-13. Epub 2013 Jan 30.


Sequencing-based genotyping of mixed human papillomavirus infections by use of RipSeq software.

Tardif KD, Simmon KE, Kommedal O, Pyne MT, Schlaberg R.

J Clin Microbiol. 2013 Apr;51(4):1278-80. doi: 10.1128/JCM.00091-13. Epub 2013 Jan 30.


Direct 16S rRNA gene sequencing from clinical specimens, with special focus on polybacterial samples and interpretation of mixed DNA chromatograms.

Kommedal O, Kvello K, Skjåstad R, Langeland N, Wiker HG.

J Clin Microbiol. 2009 Nov;47(11):3562-8. doi: 10.1128/JCM.00973-09. Epub 2009 Sep 9.


Pneumonia pathogen detection and microbial interactions in polymicrobial episodes.

Bousbia S, Raoult D, La Scola B.

Future Microbiol. 2013 May;8(5):633-60. doi: 10.2217/fmb.13.26. Review.


Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples.

Hasman H, Saputra D, Sicheritz-Ponten T, Lund O, Svendsen CA, Frimodt-Møller N, Aarestrup FM.

J Clin Microbiol. 2014 Jan;52(1):139-46. doi: 10.1128/JCM.02452-13. Epub 2013 Oct 30. Erratum in: J Clin Microbiol. 2014 Aug;52(8):3136.


Analysis of mixed sequencing chromatograms and its application in direct 16S rRNA gene sequencing of polymicrobial samples.

Kommedal O, Karlsen B, Saebø O.

J Clin Microbiol. 2008 Nov;46(11):3766-71. doi: 10.1128/JCM.00213-08. Epub 2008 Sep 3.


The utility of direct specimen detection by Sanger sequencing in hospitalized pediatric patients.

Mongkolrattanothai K, Dien Bard J.

Diagn Microbiol Infect Dis. 2017 Feb;87(2):100-102. doi: 10.1016/j.diagmicrobio.2016.10.024. Epub 2016 Nov 2.


Comparison of two approaches for the classification of 16S rRNA gene sequences.

Chatellier S, Mugnier N, Allard F, Bonnaud B, Collin V, van Belkum A, Veyrieras JB, Emler S.

J Med Microbiol. 2014 Oct;63(Pt 10):1311-5. doi: 10.1099/jmm.0.074377-0. Epub 2014 Jul 25.


Microbiological diagnosis of severe diarrhea in kidney transplant recipients by use of multiplex PCR assays.

Coste JF, Vuiblet V, Moustapha B, Bouin A, Lavaud S, Toupance O, de Rougemont A, Benejat L, Megraud F, Wolak-Thierry A, Villena I, Chemla C, Le Magrex E, de Champs C, Andreoletti L, Rieu P, Leveque N.

J Clin Microbiol. 2013 Jun;51(6):1841-9. doi: 10.1128/JCM.03366-12. Epub 2013 Apr 3.


Massive parallel sequencing provides new perspectives on bacterial brain abscesses.

Kommedal Ø, Wilhelmsen MT, Skrede S, Meisal R, Jakovljev A, Gaustad P, Hermansen NO, Vik-Mo E, Solheim O, Ambur OH, Sæbø Ø, Høstmælingen CT, Helland C.

J Clin Microbiol. 2014 Jun;52(6):1990-7. doi: 10.1128/JCM.00346-14. Epub 2014 Mar 26.


Deciphering the aetiology of a mixed fungal infection by broad-range PCR with sequencing and fluorescence in situ hybridisation.

Rickerts V, McCormick Smith I, Mousset S, Kommedal O, Fredricks DN.

Mycoses. 2013 Nov;56(6):681-6. doi: 10.1111/myc.12083. Epub 2013 Apr 8.


DNA pyrosequencing-based bacterial pathogen identification in a pediatric hospital setting.

Luna RA, Fasciano LR, Jones SC, Boyanton BL Jr, Ton TT, Versalovic J.

J Clin Microbiol. 2007 Sep;45(9):2985-92. Epub 2007 Jul 25.


Characterization of polybacterial clinical samples using a set of group-specific broad-range primers targeting the 16S rRNA gene followed by DNA sequencing and RipSeq analysis.

Kommedal O, Lekang K, Langeland N, Wiker HG.

J Med Microbiol. 2011 Jul;60(Pt 7):927-36. doi: 10.1099/jmm.0.028373-0. Epub 2011 Mar 24.


Role of universal 16S rRNA gene PCR and sequencing in diagnosis of prosthetic joint infection.

Marín M, Garcia-Lechuz JM, Alonso P, Villanueva M, Alcalá L, Gimeno M, Cercenado E, Sánchez-Somolinos M, Radice C, Bouza E.

J Clin Microbiol. 2012 Mar;50(3):583-9. doi: 10.1128/JCM.00170-11. Epub 2011 Dec 14.


The polymicrobial nature of biofilm infection.

Wolcott R, Costerton JW, Raoult D, Cutler SJ.

Clin Microbiol Infect. 2013 Feb;19(2):107-12. doi: 10.1111/j.1469-0691.2012.04001.x. Epub 2012 Aug 27. Review.


16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls.

Janda JM, Abbott SL.

J Clin Microbiol. 2007 Sep;45(9):2761-4. Epub 2007 Jul 11. Review. No abstract available.


Molecular diagnosis of polymicrobial newborn sepsis by multiplex real-time PCR using a small volume of blood sample.

Vrioni G, Daniil I, Drogari-Apiranthitou M, Kimouli M, Papadopoulou M, Tsakris A.

J Med Microbiol. 2012 Aug;61(Pt 8):1177-8. doi: 10.1099/jmm.0.037127-0. Epub 2012 May 3. No abstract available.


Detection of microbial diversity in endocarditis using cultivation-independent molecular techniques.

Wolff TY, Moser C, Bundgaard H, Høiby N, Nielsen PH, Thomsen TR.

Scand J Infect Dis. 2011 Dec;43(11-12):857-69. doi: 10.3109/00365548.2011.598877. Epub 2011 Aug 26.


Use of loop-mediated isothermal amplification to detect six groups of pathogens causing secondary lower respiratory bacterial infections in horses.

Kinoshita Y, Niwa H, Katayama Y.

Microbiol Immunol. 2015 Jun;59(6):365-70. doi: 10.1111/1348-0421.12257.

Supplemental Content

Support Center