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Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.

Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, Garcia JF, DeRisi JL, Smith T, Tobias C, Ross-Ibarra J, Korf I, Chan SW.

Genome Biol. 2013 Jan 30;14(1):R10. doi: 10.1186/gb-2013-14-1-r10.


Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences.

Shang WH, Hori T, Toyoda A, Kato J, Popendorf K, Sakakibara Y, Fujiyama A, Fukagawa T.

Genome Res. 2010 Sep;20(9):1219-28. doi: 10.1101/gr.106245.110. Epub 2010 Jun 9.


Repeatless and repeat-based centromeres in potato: implications for centromere evolution.

Gong Z, Wu Y, Koblízková A, Torres GA, Wang K, Iovene M, Neumann P, Zhang W, Novák P, Buell CR, Macas J, Jiang J.

Plant Cell. 2012 Sep;24(9):3559-74. doi: 10.1105/tpc.112.100511. Epub 2012 Sep 11.


Functional centromeres in Astragalus sinicus include a compact centromere-specific histone H3 and a 20-bp tandem repeat.

Tek AL, Kashihara K, Murata M, Nagaki K.

Chromosome Res. 2011 Nov;19(8):969-78. doi: 10.1007/s10577-011-9247-y. Epub 2011 Nov 8.


Divergence in centromere structure distinguishes related genomes in Coix lacryma-jobi and its wild relative.

Han Y, Wang G, Liu Z, Liu J, Yue W, Song R, Zhang X, Jin W.

Chromosoma. 2010 Feb;119(1):89-98. doi: 10.1007/s00412-009-0239-z. Epub 2009 Sep 8.


Identification and characterization of functional centromeres of the common bean.

Iwata A, Tek AL, Richard MM, Abernathy B, Fonsêca A, Schmutz J, Chen NW, Thareau V, Magdelenat G, Li Y, Murata M, Pedrosa-Harand A, Geffroy V, Nagaki K, Jackson SA.

Plant J. 2013 Oct;76(1):47-60. doi: 10.1111/tpj.12269. Epub 2013 Aug 5.


Tandem repeats derived from centromeric retrotransposons.

Sharma A, Wolfgruber TK, Presting GG.

BMC Genomics. 2013 Mar 4;14:142. doi: 10.1186/1471-2164-14-142.


Centromere reference models for human chromosomes X and Y satellite arrays.

Miga KH, Newton Y, Jain M, Altemose N, Willard HF, Kent WJ.

Genome Res. 2014 Apr;24(4):697-707. doi: 10.1101/gr.159624.113. Epub 2014 Feb 5.


Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea.

Tran TD, Cao HX, Jovtchev G, Neumann P, Novák P, Fojtová M, Vu GT, Macas J, Fajkus J, Schubert I, Fuchs J.

Plant J. 2015 Dec;84(6):1087-99. doi: 10.1111/tpj.13058. Epub 2015 Nov 30.


Diversity and evolution of centromere repeats in the maize genome.

Bilinski P, Distor K, Gutierrez-Lopez J, Mendoza GM, Shi J, Dawe RK, Ross-Ibarra J.

Chromosoma. 2015 Mar;124(1):57-65. doi: 10.1007/s00412-014-0483-8. Epub 2014 Sep 5.


Repeat-Associated Fission Yeast-Like Regional Centromeres in the Ascomycetous Budding Yeast Candida tropicalis.

Chatterjee G, Sankaranarayanan SR, Guin K, Thattikota Y, Padmanabhan S, Siddharthan R, Sanyal K.

PLoS Genet. 2016 Feb 4;12(2):e1005839. doi: 10.1371/journal.pgen.1005839. eCollection 2016 Feb.


Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon.

Cheng Z, Dong F, Langdon T, Ouyang S, Buell CR, Gu M, Blattner FR, Jiang J.

Plant Cell. 2002 Aug;14(8):1691-704.


High-resolution mapping and transcriptional activity analysis of chicken centromere sequences on giant lampbrush chromosomes.

Krasikova A, Fukagawa T, Zlotina A.

Chromosome Res. 2012 Dec;20(8):995-1008. doi: 10.1007/s10577-012-9321-0.


Identification and diversity of functional centromere satellites in the wild rice species Oryza brachyantha.

Yi C, Zhang W, Dai X, Li X, Gong Z, Zhou Y, Liang G, Gu M.

Chromosome Res. 2013 Dec;21(8):725-37.


The transcribed 165-bp CentO satellite is the major functional centromeric element in the wild rice species Oryza punctata.

Zhang W, Yi C, Bao W, Liu B, Cui J, Yu H, Cao X, Gu M, Liu M, Cheng Z.

Plant Physiol. 2005 Sep;139(1):306-15. Epub 2005 Aug 19.


Rapid evolution of mouse Y centromere repeat DNA belies recent sequence stability.

Pertile MD, Graham AN, Choo KH, Kalitsis P.

Genome Res. 2009 Dec;19(12):2202-13. doi: 10.1101/gr.092080.109. Epub 2009 Sep 8.


Centromere 3 specific tandem repeat from Chironomus pallidivittatus.

He H, Liao C, Edström JE.

Chromosoma. 1998 Nov;107(5):304-10.


Genome-scale computational analysis of DNA curvature and repeats in Arabidopsis and rice uncovers plant-specific genomic properties.

Masoudi-Nejad A, Movahedi S, Jáuregui R.

BMC Genomics. 2011 May 6;12:214. doi: 10.1186/1471-2164-12-214.


Identification and characterization of tandem repeats in exon III of dopamine receptor D4 (DRD4) genes from different mammalian species.

Larsen SA, Mogensen L, Dietz R, Baagøe HJ, Andersen M, Werge T, Rasmussen HB.

DNA Cell Biol. 2005 Dec;24(12):795-804.


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