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Items: 1 to 20 of 135


Seq2Ref: a web server to facilitate functional interpretation.

Li W, Cong Q, Kinch LN, Grishin NV.

BMC Bioinformatics. 2013 Jan 28;14:30. doi: 10.1186/1471-2105-14-30.


Pclust: protein network visualization highlighting experimental data.

Li W, Kinch LN, Grishin NV.

Bioinformatics. 2013 Oct 15;29(20):2647-8. doi: 10.1093/bioinformatics/btt451. Epub 2013 Aug 5.


MESSA: MEta-Server for protein Sequence Analysis.

Cong Q, Grishin NV.

BMC Biol. 2012 Oct 2;10:82. doi: 10.1186/1741-7007-10-82.


fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies.

Tung CH, Yang JM.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W438-43. Epub 2007 May 7.


ProFAT: a web-based tool for the functional annotation of protein sequences.

Bradshaw CR, Surendranath V, Habermann B.

BMC Bioinformatics. 2006 Oct 23;7:466.


HorA web server to infer homology between proteins using sequence and structural similarity.

Kim BH, Cheng H, Grishin NV.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W532-8. doi: 10.1093/nar/gkp328. Epub 2009 May 5.


PubServer: literature searches by homology.

Jaroszewski L, Koska L, Sedova M, Godzik A.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W430-5. doi: 10.1093/nar/gku450. Epub 2014 Jun 23.


PROMALS web server for accurate multiple protein sequence alignments.

Pei J, Kim BH, Tang M, Grishin NV.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W649-52. Epub 2007 Apr 22.


PPISearch: a web server for searching homologous protein-protein interactions across multiple species.

Chen CC, Lin CY, Lo YS, Yang JM.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W369-75. doi: 10.1093/nar/gkp309. Epub 2009 May 5.


COMPASS server for remote homology inference.

Sadreyev RI, Tang M, Kim BH, Grishin NV.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W653-8. Epub 2007 May 21.


Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.

Lohse M, Nagel A, Herter T, May P, Schroda M, Zrenner R, Tohge T, Fernie AR, Stitt M, Usadel B.

Plant Cell Environ. 2014 May;37(5):1250-8. doi: 10.1111/pce.12231. Epub 2013 Dec 17.


SIFTER search: a web server for accurate phylogeny-based protein function prediction.

Sahraeian SM, Luo KR, Brenner SE.

Nucleic Acids Res. 2015 Jul 1;43(W1):W141-7. doi: 10.1093/nar/gkv461. Epub 2015 May 15.


CATH FunFHMMer web server: protein functional annotations using functional family assignments.

Das S, Sillitoe I, Lee D, Lees JG, Dawson NL, Ward J, Orengo CA.

Nucleic Acids Res. 2015 Jul 1;43(W1):W148-53. doi: 10.1093/nar/gkv488. Epub 2015 May 11.


PROCAIN server for remote protein sequence similarity search.

Wang Y, Sadreyev RI, Grishin NV.

Bioinformatics. 2009 Aug 15;25(16):2076-7. doi: 10.1093/bioinformatics/btp346. Epub 2009 Jun 3.


GeneReporter--sequence-based document retrieval and annotation.

Bartsch A, Bunk B, Haddad I, Klein J, Münch R, Johl T, Kärst U, Jänsch L, Jahn D, Retter I.

Bioinformatics. 2011 Apr 1;27(7):1034-5. doi: 10.1093/bioinformatics/btr047. Epub 2011 Feb 9.


CELLO2GO: a web server for protein subCELlular LOcalization prediction with functional gene ontology annotation.

Yu CS, Cheng CW, Su WC, Chang KC, Huang SW, Hwang JK, Lu CH.

PLoS One. 2014 Jun 9;9(6):e99368. doi: 10.1371/journal.pone.0099368. eCollection 2014.


CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.

Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X.

BMC Genomics. 2012 Dec 20;13:715. doi: 10.1186/1471-2164-13-715.


KB-Rank: efficient protein structure and functional annotation identification via text query.

Julfayev ES, McLaughlin RJ, Tao YP, McLaughlin WA.

J Struct Funct Genomics. 2012 Jun;13(2):101-10. doi: 10.1007/s10969-012-9125-7. Epub 2012 Jan 21.


Using homology relations within a database markedly boosts protein sequence similarity search.

Tong J, Sadreyev RI, Pei J, Kinch LN, Grishin NV.

Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):7003-8. doi: 10.1073/pnas.1424324112. Epub 2015 May 18.

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