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Items: 1 to 20 of 125


Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners.

Pavy N, Gagnon F, Rigault P, Blais S, Deschênes A, Boyle B, Pelgas B, Deslauriers M, Clément S, Lavigne P, Lamothe M, Cooke JE, Jaramillo-Correa JP, Beaulieu J, Isabel N, Mackay J, Bousquet J.

Mol Ecol Resour. 2013 Mar;13(2):324-36. doi: 10.1111/1755-0998.12062. Epub 2013 Jan 25.


Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce (Picea mariana).

Pavy N, Gagnon F, Deschênes A, Boyle B, Beaulieu J, Bousquet J.

Mol Ecol Resour. 2016 Mar;16(2):588-98. doi: 10.1111/1755-0998.12468. Epub 2015 Oct 18.


Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce.

Pavy N, Pelgas B, Beauseigle S, Blais S, Gagnon F, Gosselin I, Lamothe M, Isabel N, Bousquet J.

BMC Genomics. 2008 Jan 18;9:21. doi: 10.1186/1471-2164-9-21.


The landscape of nucleotide polymorphism among 13,500 genes of the conifer picea glauca, relationships with functions, and comparison with medicago truncatula.

Pavy N, Deschênes A, Blais S, Lavigne P, Beaulieu J, Isabel N, Mackay J, Bousquet J.

Genome Biol Evol. 2013;5(10):1910-25. doi: 10.1093/gbe/evt143.


A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).

Ralph SG, Chun HJ, Kolosova N, Cooper D, Oddy C, Ritland CE, Kirkpatrick R, Moore R, Barber S, Holt RA, Jones SJ, Marra MA, Douglas CJ, Ritland K, Bohlmann J.

BMC Genomics. 2008 Oct 14;9:484. doi: 10.1186/1471-2164-9-484.


A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation.

Howe GT, Yu J, Knaus B, Cronn R, Kolpak S, Dolan P, Lorenz WW, Dean JF.

BMC Genomics. 2013 Feb 28;14:137. doi: 10.1186/1471-2164-14-137.


The development and characterization of a 60K SNP chip for chicken.

Groenen MA, Megens HJ, Zare Y, Warren WC, Hillier LW, Crooijmans RP, Vereijken A, Okimoto R, Muir WM, Cheng HH.

BMC Genomics. 2011 May 31;12(1):274. doi: 10.1186/1471-2164-12-274.


The genomic architecture and association genetics of adaptive characters using a candidate SNP approach in boreal black spruce.

Prunier J, Pelgas B, Gagnon F, Desponts M, Isabel N, Beaulieu J, Bousquet J.

BMC Genomics. 2013 Jun 1;14:368. doi: 10.1186/1471-2164-14-368.


Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout.

Boussaha M, Guyomard R, Cabau C, Esquerré D, Quillet E.

BMC Genomics. 2012 Jun 13;13:238. doi: 10.1186/1471-2164-13-238.


Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.

Chancerel E, Lepoittevin C, Le Provost G, Lin YC, Jaramillo-Correa JP, Eckert AJ, Wegrzyn JL, Zelenika D, Boland A, Frigerio JM, Chaumeil P, Garnier-Géré P, Boury C, Grivet D, González-Martínez SC, Rouzé P, Van de Peer Y, Neale DB, Cervera MT, Kremer A, Plomion C.

BMC Genomics. 2011 Jul 18;12:368. doi: 10.1186/1471-2164-12-368.


Transcriptome mining, functional characterization, and phylogeny of a large terpene synthase gene family in spruce (Picea spp.).

Keeling CI, Weisshaar S, Ralph SG, Jancsik S, Hamberger B, Dullat HK, Bohlmann J.

BMC Plant Biol. 2011 Mar 7;11:43. doi: 10.1186/1471-2229-11-43.


Scanning the genome for gene SNPs related to climate adaptation and estimating selection at the molecular level in boreal black spruce.

Prunier J, Laroche J, Beaulieu J, Bousquet J.

Mol Ecol. 2011 Apr;20(8):1702-16. doi: 10.1111/j.1365-294X.2011.05045.x. Epub 2011 Mar 7.


Population genomics: a new generation of genome scans to bridge the gap with functional genomics.

Bonin A.

Mol Ecol. 2008 Aug;17(16):3583-4. doi: 10.1111/j.1365-294X.2008.03854.x. Epub 2008 Jul 3.


The easy road to genome-wide medium density SNP screening in a non-model species: development and application of a 10 K SNP-chip for the house sparrow (Passer domesticus).

Hagen IJ, Billing AM, Rønning B, Pedersen SA, Pärn H, Slate J, Jensen H.

Mol Ecol Resour. 2013 May;13(3):429-39. doi: 10.1111/1755-0998.12088. Epub 2013 Mar 9.


A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species.

Geraldes A, Difazio SP, Slavov GT, Ranjan P, Muchero W, Hannemann J, Gunter LE, Wymore AM, Grassa CJ, Farzaneh N, Porth I, McKown AD, Skyba O, Li E, Fujita M, Klápště J, Martin J, Schackwitz W, Pennacchio C, Rokhsar D, Friedmann MC, Wasteneys GO, Guy RD, El-Kassaby YA, Mansfield SD, Cronk QC, Ehlting J, Douglas CJ, Tuskan GA.

Mol Ecol Resour. 2013 Mar;13(2):306-23. doi: 10.1111/1755-0998.12056. Epub 2013 Jan 11.


Hot topic: performance of bovine high-density genotyping platforms in Holsteins and Jerseys.

Rincon G, Weber KL, Eenennaam AL, Golden BL, Medrano JF.

J Dairy Sci. 2011 Dec;94(12):6116-21. doi: 10.3168/jds.2011-4764.


Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms.

Chen J, Uebbing S, Gyllenstrand N, Lagercrantz U, Lascoux M, Källman T.

BMC Genomics. 2012 Nov 2;13:589. doi: 10.1186/1471-2164-13-589.

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