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Items: 1 to 20 of 98

1.

Synonymous codon usage bias is correlative to intron number and shows disequilibrium among exons in plants.

Qin Z, Cai Z, Xia G, Wang M.

BMC Genomics. 2013 Jan 28;14:56. doi: 10.1186/1471-2164-14-56.

2.

Synonymous codon usage bias in plant mitochondrial genes is associated with intron number and mirrors species evolution.

Xu W, Xing T, Zhao M, Yin X, Xia G, Wang M.

PLoS One. 2015 Jun 25;10(6):e0131508. doi: 10.1371/journal.pone.0131508. eCollection 2015.

3.

Synonymous Codon Usage Bias in the Plastid Genome is Unrelated to Gene Structure and Shows Evolutionary Heterogeneity.

Qi Y, Xu W, Xing T, Zhao M, Li N, Yan L, Xia G, Wang M.

Evol Bioinform Online. 2015 Apr 7;11:65-77. doi: 10.4137/EBO.S22566. eCollection 2015.

4.

Can codon usage bias explain intron phase distributions and exon symmetry?

Ruvinsky A, Eskesen ST, Eskesen FN, Hurst LD.

J Mol Evol. 2005 Jan;60(1):99-104.

PMID:
15696372
5.

Effect of exonic splicing regulation on synonymous codon usage in alternatively spliced exons of Dscam.

Takahashi A.

BMC Evol Biol. 2009 Aug 27;9:214. doi: 10.1186/1471-2148-9-214.

6.

Comparison of codon usage and tRNAs in mitochondrial genomes of Candida species.

Kamatani T, Yamamoto T.

Biosystems. 2007 Sep-Oct;90(2):362-70. Epub 2006 Oct 5.

PMID:
17123703
7.

Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias.

Liu Y, Cox CJ, Wang W, Goffinet B.

Syst Biol. 2014 Nov;63(6):862-78. doi: 10.1093/sysbio/syu049. Epub 2014 Jul 28.

PMID:
25070972
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11.

Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals.

Parmley JL, Hurst LD.

Mol Biol Evol. 2007 Aug;24(8):1600-3. Epub 2007 May 24.

PMID:
17525472
13.

System analysis of synonymous codon usage biases in archaeal virus genomes.

Li S, Yang J.

J Theor Biol. 2014 Aug 21;355:128-39. doi: 10.1016/j.jtbi.2014.03.022. Epub 2014 Mar 28.

PMID:
24685889
14.

Modeling the evolution dynamics of exon-intron structure with a general random fragmentation process.

Wang L, Stein LD.

BMC Evol Biol. 2013 Feb 28;13:57. doi: 10.1186/1471-2148-13-57.

15.

Patterns of exon-intron architecture variation of genes in eukaryotic genomes.

Zhu L, Zhang Y, Zhang W, Yang S, Chen JQ, Tian D.

BMC Genomics. 2009 Jan 24;10:47. doi: 10.1186/1471-2164-10-47.

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Evolution of Synonymous Codon Usage in the Mitogenomes of Certain Species of Bilaterian Lineage with Special Reference to Chaetognatha.

Karumathil S, Dirisala VR, Srinadh U, Nikhil V, Kumar NS, Nair RR.

Bioinform Biol Insights. 2016 Sep 22;10:167-84. doi: 10.4137/BBI.S38192. eCollection 2016.

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19.

Analysis of evolution of exon-intron structure of eukaryotic genes.

Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV.

Brief Bioinform. 2005 Jun;6(2):118-34. Review.

PMID:
15975222
20.

Analysis of codon usage bias of mitochondrial genome in Bombyx mori and its relation to evolution.

Wei L, He J, Jia X, Qi Q, Liang Z, Zheng H, Ping Y, Liu S, Sun J.

BMC Evol Biol. 2014 Dec 17;14:262. doi: 10.1186/s12862-014-0262-4.

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