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Items: 1 to 20 of 116

1.

Quantification of 5-methylcytosine and 5-hydroxymethylcytosine in genomic DNA from hepatocellular carcinoma tissues by capillary hydrophilic-interaction liquid chromatography/quadrupole TOF mass spectrometry.

Chen ML, Shen F, Huang W, Qi JH, Wang Y, Feng YQ, Liu SM, Yuan BF.

Clin Chem. 2013 May;59(5):824-32. doi: 10.1373/clinchem.2012.193938. Epub 2013 Jan 23.

2.
3.

Hydrophilic material for the selective enrichment of 5-hydroxymethylcytosine and its liquid chromatography-tandem mass spectrometry detection.

Tang Y, Chu JM, Huang W, Xiong J, Xing XW, Zhou X, Feng YQ, Yuan BF.

Anal Chem. 2013 Jun 18;85(12):6129-35. doi: 10.1021/ac4010869. Epub 2013 May 28.

PMID:
23678980
4.

Quantification of the sixth DNA base 5-hydroxymethylcytosine in colorectal cancer tissue and C-26 cell line.

Zhang LT, Zhang LJ, Zhang JJ, Ye XX, Xie AM, Chen LY, Kang JX, Cai C.

Bioanalysis. 2013 Apr;5(7):839-45. doi: 10.4155/bio.13.28.

PMID:
23534428
5.

Association of 5-methylcytosine and 5-hydroxymethylcytosine with mitochondrial DNA content and clinical and biochemical parameters in hepatocellular carcinoma.

Shen F, Huang W, Qi JH, Yuan BF, Huang JT, Zhou X, Feng YQ, Liu YJ, Liu SM.

PLoS One. 2013 Oct 15;8(10):e76967. doi: 10.1371/journal.pone.0076967. eCollection 2013.

6.

High sensitivity 5-hydroxymethylcytosine detection in Balb/C brain tissue.

Davis T, Vaisvila R.

J Vis Exp. 2011 Feb 1;(48). pii: 2661. doi: 10.3791/2661.

7.

Decrease of 5-hydroxymethylcytosine is associated with progression of hepatocellular carcinoma through downregulation of TET1.

Liu C, Liu L, Chen X, Shen J, Shan J, Xu Y, Yang Z, Wu L, Xia F, Bie P, Cui Y, Bian XW, Qian C.

PLoS One. 2013 May 9;8(5):e62828. doi: 10.1371/journal.pone.0062828. Print 2013.

8.

Simultaneous determination of global DNA methylation and hydroxymethylation levels by hydrophilic interaction liquid chromatography-tandem mass spectrometry.

Zhang L, Zhang L, Zhou K, Ye X, Zhang J, Xie A, Chen L, Kang JX, Cai C.

J Biomol Screen. 2012 Aug;17(7):877-84. doi: 10.1177/1087057112447946. Epub 2012 May 29.

PMID:
22644266
9.

DNA hydroxymethylation age of human blood determined by capillary hydrophilic-interaction liquid chromatography/mass spectrometry.

Xiong J, Jiang HP, Peng CY, Deng QY, Lan MD, Zeng H, Zheng F, Feng YQ, Yuan BF.

Clin Epigenetics. 2015 Jul 23;7:72. doi: 10.1186/s13148-015-0109-x. eCollection 2015.

10.

Array-based assay detects genome-wide 5-mC and 5-hmC in the brains of humans, non-human primates, and mice.

Chopra P, Papale LA, White AT, Hatch A, Brown RM, Garthwaite MA, Roseboom PH, Golos TG, Warren ST, Alisch RS.

BMC Genomics. 2014 Feb 13;15:131. doi: 10.1186/1471-2164-15-131.

11.

A sensitive mass spectrometry method for simultaneous quantification of DNA methylation and hydroxymethylation levels in biological samples.

Le T, Kim KP, Fan G, Faull KF.

Anal Biochem. 2011 May 15;412(2):203-9. doi: 10.1016/j.ab.2011.01.026. Epub 2011 Jan 24.

12.

Lineage-specific distribution of high levels of genomic 5-hydroxymethylcytosine in mammalian development.

Ruzov A, Tsenkina Y, Serio A, Dudnakova T, Fletcher J, Bai Y, Chebotareva T, Pells S, Hannoun Z, Sullivan G, Chandran S, Hay DC, Bradley M, Wilmut I, De Sousa P.

Cell Res. 2011 Sep;21(9):1332-42. doi: 10.1038/cr.2011.113. Epub 2011 Jul 12.

13.

A validated quantitative liquid chromatography-tandem quadrupole mass spectrometry method for monitoring isotopologues to evaluate global modified cytosine ratios in genomic DNA.

Tsuji M, Matsunaga H, Jinno D, Tsukamoto H, Suzuki N, Tomioka Y.

J Chromatogr B Analyt Technol Biomed Life Sci. 2014 Mar 15;953-954:38-47. doi: 10.1016/j.jchromb.2014.01.050. Epub 2014 Feb 7.

PMID:
24568937
14.

MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation.

Qu J, Zhou M, Song Q, Hong EE, Smith AD.

Bioinformatics. 2013 Oct 15;29(20):2645-6. doi: 10.1093/bioinformatics/btt459. Epub 2013 Aug 21.

15.

Quantification of Oxidized 5-Methylcytosine Bases and TET Enzyme Activity.

Liu MY, DeNizio JE, Kohli RM.

Methods Enzymol. 2016;573:365-85. doi: 10.1016/bs.mie.2015.12.006. Epub 2016 Feb 1.

16.

5-methylcytosine and its derivatives.

Yuan BF.

Adv Clin Chem. 2014;67:151-87. doi: 10.1016/bs.acc.2014.09.003. Epub 2014 Nov 4. Review.

PMID:
25735861
17.

Whole-genome DNA methylation and hydroxymethylation profiling for HBV-related hepatocellular carcinoma.

Ye C, Tao R, Cao Q, Zhu D, Wang Y, Wang J, Lu J, Chen E, Li L.

Int J Oncol. 2016 Aug;49(2):589-602. doi: 10.3892/ijo.2016.3535. Epub 2016 May 24.

PMID:
27221337
18.

Prognostic values of 5-hmC, 5-mC and TET2 in epithelial ovarian cancer.

Zhang LY, Li PL, Wang TZ, Zhang XC.

Arch Gynecol Obstet. 2015 Oct;292(4):891-7. doi: 10.1007/s00404-015-3704-3. Epub 2015 Apr 1.

PMID:
25827305
19.

Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer.

Bhattacharyya S, Yu Y, Suzuki M, Campbell N, Mazdo J, Vasanthakumar A, Bhagat TD, Nischal S, Christopeit M, Parekh S, Steidl U, Godley L, Maitra A, Greally JM, Verma A.

Nucleic Acids Res. 2013 Sep;41(16):e157. doi: 10.1093/nar/gkt601. Epub 2013 Jul 16.

20.

Determination of oxidation products of 5-methylcytosine in plants by chemical derivatization coupled with liquid chromatography/tandem mass spectrometry analysis.

Tang Y, Xiong J, Jiang HP, Zheng SJ, Feng YQ, Yuan BF.

Anal Chem. 2014 Aug 5;86(15):7764-72. doi: 10.1021/ac5016886. Epub 2014 Jul 8.

PMID:
24970241

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