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Items: 1 to 20 of 104

1.

The spatial organization of metabolism within the plant cell.

Sweetlove LJ, Fernie AR.

Annu Rev Plant Biol. 2013;64:723-46. doi: 10.1146/annurev-arplant-050312-120233. Epub 2013 Jan 16. Review.

PMID:
23330793
2.

The challenges of cellular compartmentalization in plant metabolic engineering.

Heinig U, Gutensohn M, Dudareva N, Aharoni A.

Curr Opin Biotechnol. 2013 Apr;24(2):239-46. doi: 10.1016/j.copbio.2012.11.006. Epub 2012 Dec 12. Review.

PMID:
23246154
3.

Compartmentation in plant metabolism.

Lunn JE.

J Exp Bot. 2007;58(1):35-47. Epub 2006 Oct 9. Review.

PMID:
17030538
4.

Metabolic network reconstruction and their topological analysis.

Beurton-Aimar M, Nguyen TV, Colombié S.

Methods Mol Biol. 2014;1090:19-38. doi: 10.1007/978-1-62703-688-7_2.

PMID:
24222407
5.
6.

A computational analysis of protein interactions in metabolic networks reveals novel enzyme pairs potentially involved in metabolic channeling.

Huthmacher C, Gille C, Holzhütter HG.

J Theor Biol. 2008 Jun 7;252(3):456-64. Epub 2007 Oct 5.

PMID:
17988690
7.

Transporters for amino acids in plant cells: some functions and many unknowns.

Tegeder M.

Curr Opin Plant Biol. 2012 Jun;15(3):315-21. doi: 10.1016/j.pbi.2012.02.001. Epub 2012 Feb 25. Review.

PMID:
22366488
8.

Organelle extensions in plant cells.

Mathur J, Mammone A, Barton KA.

J Integr Plant Biol. 2012 Nov;54(11):851-67. doi: 10.1111/j.1744-7909.2012.01175.x. Review.

PMID:
23046073
9.

Flux analysis in plant metabolic networks: increasing throughput and coverage.

Junker BH.

Curr Opin Biotechnol. 2014 Apr;26:183-8. doi: 10.1016/j.copbio.2014.01.016. Epub 2014 Feb 21. Review.

PMID:
24561560
10.

Are we ready for genome-scale modeling in plants?

Collakova E, Yen JY, Senger RS.

Plant Sci. 2012 Aug;191-192:53-70. doi: 10.1016/j.plantsci.2012.04.010. Epub 2012 May 3. Review.

11.

A systems-level model reveals that 1,2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration.

Jakobson CM, Tullman-Ercek D, Slininger MF, Mangan NM.

PLoS Comput Biol. 2017 May 5;13(5):e1005525. doi: 10.1371/journal.pcbi.1005525. eCollection 2017 May.

12.

Coordinations between gene modules control the operation of plant amino acid metabolic networks.

Less H, Galili G.

BMC Syst Biol. 2009 Jan 26;3:14. doi: 10.1186/1752-0509-3-14.

13.

Revealing metabolic phenotypes in plants: inputs from NMR analysis.

Ratcliffe RG, Shachar-Hill Y.

Biol Rev Camb Philos Soc. 2005 Feb;80(1):27-43. Review.

PMID:
15727037
14.

Predicting functional associations from metabolism using bi-partite network algorithms.

Veeramani B, Bader JS.

BMC Syst Biol. 2010 Jul 14;4:95. doi: 10.1186/1752-0509-4-95.

15.

On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality.

Szymanski J, Bielecka M, Carrari F, Fernie AR, Hoefgen R, Nikiforova VJ.

Phytochemistry. 2007 Aug-Sep;68(16-18):2163-75. Epub 2007 Jun 4.

PMID:
17544461
16.

Filling kinetic gaps: dynamic modeling of metabolism where detailed kinetic information is lacking.

Resendis-Antonio O.

PLoS One. 2009;4(3):e4967. doi: 10.1371/journal.pone.0004967. Epub 2009 Mar 23.

17.

Metabolic cartography: experimental quantification of metabolic fluxes from isotopic labelling studies.

O'Grady J, Schwender J, Shachar-Hill Y, Morgan JA.

J Exp Bot. 2012 Mar;63(6):2293-308. doi: 10.1093/jxb/ers032. Epub 2012 Feb 27. Review.

PMID:
22371075
18.

Insights into plant metabolic networks from steady-state metabolic flux analysis.

Kruger NJ, Ratcliffe RG.

Biochimie. 2009 Jun;91(6):697-702. doi: 10.1016/j.biochi.2009.01.004. Review.

PMID:
19455743
19.

Plant genome-scale metabolic reconstruction and modelling.

de Oliveira Dal'Molin CG, Nielsen LK.

Curr Opin Biotechnol. 2013 Apr;24(2):271-7. doi: 10.1016/j.copbio.2012.08.007. Epub 2012 Sep 1. Review.

PMID:
22947602
20.

Control limits for accumulation of plant metabolites: brute force is no substitute for understanding.

Morandini P.

Plant Biotechnol J. 2013 Feb;11(2):253-67. doi: 10.1111/pbi.12035. Epub 2013 Jan 10. Review.

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