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Items: 1 to 20 of 91

1.

Genome-wide quantitative enhancer activity maps identified by STARR-seq.

Arnold CD, Gerlach D, Stelzer C, Boryń ŁM, Rath M, Stark A.

Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science.1232542. Epub 2013 Jan 17.

2.

STARR-seq - principles and applications.

Muerdter F, Boryń ŁM, Arnold CD.

Genomics. 2015 Sep;106(3):145-50. doi: 10.1016/j.ygeno.2015.06.001. Epub 2015 Jun 11. Review.

3.

Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin.

Shlyueva D, Stelzer C, Gerlach D, Yáñez-Cuna JO, Rath M, Boryń LM, Arnold CD, Stark A.

Mol Cell. 2014 Apr 10;54(1):180-92. doi: 10.1016/j.molcel.2014.02.026. Epub 2014 Mar 27.

4.

High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq.

Vanhille L, Griffon A, Maqbool MA, Zacarias-Cabeza J, Dao LT, Fernandez N, Ballester B, Andrau JC, Spicuglia S.

Nat Commun. 2015 Apr 15;6:6905. doi: 10.1038/ncomms7905.

PMID:
25872643
5.

Enhancer-trap targeting at the Broad-Complex locus of Drosophila melanogaster.

Gonzy-Tréboul G, Lepesant JA, Deutsch J.

Genes Dev. 1995 May 1;9(9):1137-48.

6.

Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.

Zabidi MA, Arnold CD, Schernhuber K, Pagani M, Rath M, Frank O, Stark A.

Nature. 2015 Feb 26;518(7540):556-9. doi: 10.1038/nature13994. Epub 2014 Dec 15.

PMID:
25517091
7.

Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution.

Arnold CD, Gerlach D, Spies D, Matts JA, Sytnikova YA, Pagani M, Lau NC, Stark A.

Nat Genet. 2014 Jul;46(7):685-92. doi: 10.1038/ng.3009. Epub 2014 Jun 8.

8.

A new technique for selective identification and mapping of enhancers within long genomic sequences.

Chernov I, Stukacheva E, Akopov S, Didych D, Nikolaev L, Sverdlov E.

Biotechniques. 2008 May;44(6):775-84. doi: 10.2144/000112732.

9.

Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes.

Phinchongsakuldit J, MacArthur S, Brookfield JF.

Mol Biol Evol. 2004 Feb;21(2):348-63. Epub 2003 Dec 5.

PMID:
14660693
10.

Genome-scale functional characterization of Drosophila developmental enhancers in vivo.

Kvon EZ, Kazmar T, Stampfel G, Yáñez-Cuna JO, Pagani M, Schernhuber K, Dickson BJ, Stark A.

Nature. 2014 Aug 7;512(7512):91-5. doi: 10.1038/nature13395. Epub 2014 Jun 1.

PMID:
24896182
11.

Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.

Yáñez-Cuna JO, Arnold CD, Stampfel G, Boryń LM, Gerlach D, Rath M, Stark A.

Genome Res. 2014 Jul;24(7):1147-56. doi: 10.1101/gr.169243.113. Epub 2014 Apr 8.

12.

Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions.

Yaragatti M, Basilico C, Dailey L.

Genome Res. 2008 Jun;18(6):930-8. doi: 10.1101/gr.073460.107. Epub 2008 Apr 25.

14.

Identification of ovarian enhancer-binding factors which bind to ovarian enhancer 1 of the Drosophila genes yp1 and yp2.

Chung YD, Kwon HC, Chung KW, Kim SJ, Kim K, Lee CC.

Mol Gen Genet. 1996 Jun 12;251(3):347-51.

PMID:
8676877
15.

Conservation across species identifies several transcriptional enhancers in the HEX genomic region.

D'Elia AV, Bregant E, Passon N, Puppin C, Meneghel A, Damante G.

Mol Cell Biochem. 2009 Dec;332(1-2):67-75. doi: 10.1007/s11010-009-0175-5. Epub 2009 Jun 25.

PMID:
19554426
16.
17.

Dissecting the regulatory switches of development: lessons from enhancer evolution in Drosophila.

Borok MJ, Tran DA, Ho MC, Drewell RA.

Development. 2010 Jan;137(1):5-13. doi: 10.1242/dev.036160. Review.

18.

Enhancer trapping with a red fluorescent protein reporter in Drosophila.

Akimoto A, Wada H, Hayashi S.

Dev Dyn. 2005 Jul;233(3):993-7.

19.

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