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Items: 1 to 20 of 95

1.

mRNA secondary structure optimization using a correlated stem-loop prediction.

Gaspar P, Moura G, Santos MA, Oliveira JL.

Nucleic Acids Res. 2013 Apr 1;41(6):e73. doi: 10.1093/nar/gks1473. Epub 2013 Jan 15. Erratum in: Nucleic Acids Res. 2016 Jun 20;44(11):5490.

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Post-transcriptional control of bacteriophage T4 gene 25 expression: mRNA secondary structure that enhances translational initiation.

Nivinskas R, Malys N, Klausa V, Vaiskunaite R, Gineikiene E.

J Mol Biol. 1999 May 7;288(3):291-304.

PMID:
10329143
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7.

RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences.

Pavesi G, Mauri G, Stefani M, Pesole G.

Nucleic Acids Res. 2004 Jun 15;32(10):3258-69. Print 2004.

9.

RNA stem-loop enhanced expression of previously non-expressible genes.

Paulus M, Haslbeck M, Watzele M.

Nucleic Acids Res. 2004 May 26;32(9):e78.

10.

TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.

Harmanci AO, Sharma G, Mathews DH.

BMC Bioinformatics. 2011 Apr 20;12:108. doi: 10.1186/1471-2105-12-108.

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Free energy minimization to predict RNA secondary structures and computational RNA design.

Churkin A, Weinbrand L, Barash D.

Methods Mol Biol. 2015;1269:3-16. doi: 10.1007/978-1-4939-2291-8_1.

PMID:
25577369
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15.

Parsing nucleic acid pseudoknotted secondary structure: algorithm and applications.

Rastegari B, Condon A.

J Comput Biol. 2007 Jan-Feb;14(1):16-32.

PMID:
17381343
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17.

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site.

Kochetov AV, Palyanov A, Titov II, Grigorovich D, Sarai A, Kolchanov NA.

BMC Bioinformatics. 2007 Aug 30;8:318.

18.

Efficient algorithms for folding and comparing nucleic acid sequences.

Dumas JP, Ninio J.

Nucleic Acids Res. 1982 Jan 11;10(1):197-206.

19.

[Non-fused expression of HAb18GEF by reducing stability of translational initiation region in mRNA].

Zhang SH, Xing JL, Yao XY, Chen ZN.

Sheng Wu Gong Cheng Xue Bao. 2004 Mar;20(2):175-80. Chinese.

PMID:
15969104
20.

Deciphering the rules by which dynamics of mRNA secondary structure affect translation efficiency in Saccharomyces cerevisiae.

Mao Y, Liu H, Liu Y, Tao S.

Nucleic Acids Res. 2014 Apr;42(8):4813-22. doi: 10.1093/nar/gku159. Epub 2014 Feb 21.

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