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Items: 1 to 20 of 137


Negated bio-events: analysis and identification.

Nawaz R, Thompson P, Ananiadou S.

BMC Bioinformatics. 2013 Jan 16;14:14. doi: 10.1186/1471-2105-14-14.


Extracting semantically enriched events from biomedical literature.

Miwa M, Thompson P, McNaught J, Kell DB, Ananiadou S.

BMC Bioinformatics. 2012 May 23;13:108. doi: 10.1186/1471-2105-13-108.


Biomedical events extraction using the hidden vector state model.

Zhou D, He Y.

Artif Intell Med. 2011 Nov;53(3):205-13. doi: 10.1016/j.artmed.2011.08.002.


Biomedical negation scope detection with conditional random fields.

Agarwal S, Yu H.

J Am Med Inform Assoc. 2010 Nov-Dec;17(6):696-701. doi: 10.1136/jamia.2010.003228.


Linguistic scope-based and biological event-based speculation and negation annotations in the BioScope and Genia Event corpora.

Vincze V, Szarvas G, Móra G, Ohta T, Farkas R.

J Biomed Semantics. 2011 Oct 6;2 Suppl 5:S8. doi: 10.1186/2041-1480-2-S5-S8.


Event extraction with complex event classification using rich features.

Miwa M, Saetre R, Kim JD, Tsujii J.

J Bioinform Comput Biol. 2010 Feb;8(1):131-46.


A semi-supervised learning framework for biomedical event extraction based on hidden topics.

Zhou D, Zhong D.

Artif Intell Med. 2015 May;64(1):51-8. doi: 10.1016/j.artmed.2015.03.004.


Biological event composition.

Kilicoglu H, Bergler S.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S7. doi: 10.1186/1471-2105-13-S11-S7.


Enriching a biomedical event corpus with meta-knowledge annotation.

Thompson P, Nawaz R, McNaught J, Ananiadou S.

BMC Bioinformatics. 2011 Oct 10;12:393. doi: 10.1186/1471-2105-12-393.


BioNØT: a searchable database of biomedical negated sentences.

Agarwal S, Yu H, Kohane I.

BMC Bioinformatics. 2011 Oct 27;12:420. doi: 10.1186/1471-2105-12-420.


Event trigger identification for biomedical events extraction using domain knowledge.

Zhou D, Zhong D, He Y.

Bioinformatics. 2014 Jun 1;30(11):1587-94. doi: 10.1093/bioinformatics/btu061.


Discriminative and informative features for biomolecular text mining with ensemble feature selection.

Van Landeghem S, Abeel T, Saeys Y, Van de Peer Y.

Bioinformatics. 2010 Sep 15;26(18):i554-60. doi: 10.1093/bioinformatics/btq381.


A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems.

Peng Y, Torii M, Wu CH, Vijay-Shanker K.

BMC Bioinformatics. 2014 Aug 23;15:285. doi: 10.1186/1471-2105-15-285.


A robust approach to extract biomedical events from literature.

Bui QC, Sloot PM.

Bioinformatics. 2012 Oct 15;28(20):2654-61. doi: 10.1093/bioinformatics/bts487.


TEES 2.2: Biomedical Event Extraction for Diverse Corpora.

Björne J, Salakoski T.

BMC Bioinformatics. 2015;16 Suppl 16:S4. doi: 10.1186/1471-2105-16-S16-S4.


University of Turku in the BioNLP'11 Shared Task.

Björne J, Ginter F, Salakoski T.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S4. doi: 10.1186/1471-2105-13-S11-S4.


Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90.


The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.

Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S3. doi: 10.1186/1471-2105-12-S8-S3.


Self-training in significance space of support vectors for imbalanced biomedical event data.

Munkhdalai T, Namsrai OE, Ryu K.

BMC Bioinformatics. 2015;16 Suppl 7:S6. doi: 10.1186/1471-2105-16-S7-S6.


Extracting rate changes in transcriptional regulation from MEDLINE abstracts.

Liu W, Miao K, Li G, Chang K, Zheng J, Rajapakse JC.

BMC Bioinformatics. 2014;15 Suppl 2:S4. doi: 10.1186/1471-2105-15-S2-S4.

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