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Items: 1 to 20 of 111

1.

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition.

Chen W, Feng PM, Lin H, Chou KC.

Nucleic Acids Res. 2013 Apr 1;41(6):e68. doi: 10.1093/nar/gks1450. Epub 2013 Jan 8.

2.

iRSpot-TNCPseAAC: identify recombination spots with trinucleotide composition and pseudo amino acid components.

Qiu WR, Xiao X, Chou KC.

Int J Mol Sci. 2014 Jan 24;15(2):1746-66. doi: 10.3390/ijms15021746.

3.

Combining pseudo dinucleotide composition with the Z curve method to improve the accuracy of predicting DNA elements: a case study in recombination spots.

Dong C, Yuan YZ, Zhang FZ, Hua HL, Ye YN, Labena AA, Lin H, Chen W, Guo FB.

Mol Biosyst. 2016 Aug 16;12(9):2893-900. doi: 10.1039/c6mb00374e.

PMID:
27410247
4.

iRSpot-EL: identify recombination spots with an ensemble learning approach.

Liu B, Wang S, Long R, Chou KC.

Bioinformatics. 2017 Jan 1;33(1):35-41. doi: 10.1093/bioinformatics/btw539. Epub 2016 Aug 16.

PMID:
27531102
5.

Using weighted features to predict recombination hotspots in Saccharomyces cerevisiae.

Liu G, Xing Y, Cai L.

J Theor Biol. 2015 Oct 7;382:15-22. doi: 10.1016/j.jtbi.2015.06.030. Epub 2015 Jun 30.

PMID:
26141645
6.

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition.

Guo SH, Deng EZ, Xu LQ, Ding H, Lin H, Chen W, Chou KC.

Bioinformatics. 2014 Jun 1;30(11):1522-9. doi: 10.1093/bioinformatics/btu083. Epub 2014 Feb 6.

PMID:
24504871
7.

iSS-PseDNC: identifying splicing sites using pseudo dinucleotide composition.

Chen W, Feng PM, Lin H, Chou KC.

Biomed Res Int. 2014;2014:623149. doi: 10.1155/2014/623149. Epub 2014 May 21.

8.
9.

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition.

Lin H, Deng EZ, Ding H, Chen W, Chou KC.

Nucleic Acids Res. 2014 Dec 1;42(21):12961-72. doi: 10.1093/nar/gku1019. Epub 2014 Oct 31.

10.

pRNAm-PC: Predicting N(6)-methyladenosine sites in RNA sequences via physical-chemical properties.

Liu Z, Xiao X, Yu DJ, Jia J, Qiu WR, Chou KC.

Anal Biochem. 2016 Mar 15;497:60-7. doi: 10.1016/j.ab.2015.12.017. Epub 2015 Dec 31.

PMID:
26748145
11.

Recombination Hotspot/Coldspot Identification Combining Three Different Pseudocomponents via an Ensemble Learning Approach.

Liu B, Liu Y, Huang D.

Biomed Res Int. 2016;2016:8527435. doi: 10.1155/2016/8527435. Epub 2016 Aug 25.

12.

RF-DYMHC: detecting the yeast meiotic recombination hotspots and coldspots by random forest model using gapped dinucleotide composition features.

Jiang P, Wu H, Wei J, Sang F, Sun X, Lu Z.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W47-51. Epub 2007 May 3.

13.

iRNAm5C-PseDNC: identifying RNA 5-methylcytosine sites by incorporating physical-chemical properties into pseudo dinucleotide composition.

Qiu WR, Jiang SY, Xu ZC, Xiao X, Chou KC.

Oncotarget. 2017 Jun 20;8(25):41178-41188. doi: 10.18632/oncotarget.17104.

14.

iRSpot-GAEnsC: identifing recombination spots via ensemble classifier and extending the concept of Chou's PseAAC to formulate DNA samples.

Kabir M, Hayat M.

Mol Genet Genomics. 2016 Feb;291(1):285-96. doi: 10.1007/s00438-015-1108-5. Epub 2015 Aug 30.

PMID:
26319782
15.

iTIS-PseTNC: a sequence-based predictor for identifying translation initiation site in human genes using pseudo trinucleotide composition.

Chen W, Feng PM, Deng EZ, Lin H, Chou KC.

Anal Biochem. 2014 Oct 1;462:76-83. doi: 10.1016/j.ab.2014.06.022. Epub 2014 Jul 10.

PMID:
25016190
16.

Sequence-based identification of recombination spots using pseudo nucleic acid representation and recursive feature extraction by linear kernel SVM.

Li L, Yu S, Xiao W, Li Y, Huang L, Zheng X, Zhou S, Yang H.

BMC Bioinformatics. 2014 Nov 20;15:340. doi: 10.1186/1471-2105-15-340.

18.

iMiRNA-PseDPC: microRNA precursor identification with a pseudo distance-pair composition approach.

Liu B, Fang L, Liu F, Wang X, Chou KC.

J Biomol Struct Dyn. 2016;34(1):223-35. doi: 10.1080/07391102.2015.1014422. Epub 2015 Mar 3.

PMID:
25645238
19.

iRNA-Methyl: Identifying N(6)-methyladenosine sites using pseudo nucleotide composition.

Chen W, Feng P, Ding H, Lin H, Chou KC.

Anal Biochem. 2015 Dec 1;490:26-33. doi: 10.1016/j.ab.2015.08.021. Epub 2015 Aug 24.

PMID:
26314792
20.

iDNA-Methyl: identifying DNA methylation sites via pseudo trinucleotide composition.

Liu Z, Xiao X, Qiu WR, Chou KC.

Anal Biochem. 2015 Apr 1;474:69-77. doi: 10.1016/j.ab.2014.12.009. Epub 2015 Jan 14.

PMID:
25596338

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