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Items: 1 to 20 of 222

1.

Chapter 12: Human microbiome analysis.

Morgan XC, Huttenhower C.

PLoS Comput Biol. 2012;8(12):e1002808. doi: 10.1371/journal.pcbi.1002808. Epub 2012 Dec 27.

2.

Application of metagenomics in the human gut microbiome.

Wang WL, Xu SY, Ren ZG, Tao L, Jiang JW, Zheng SS.

World J Gastroenterol. 2015 Jan 21;21(3):803-14. doi: 10.3748/wjg.v21.i3.803. Review.

3.

High throughput sequencing methods for microbiome profiling: application to food animal systems.

Highlander SK.

Anim Health Res Rev. 2012 Jun;13(1):40-53. doi: 10.1017/S1466252312000126. Review.

PMID:
22853944
4.

Advancements toward a systems level understanding of the human oral microbiome.

McLean JS.

Front Cell Infect Microbiol. 2014 Jul 29;4:98. doi: 10.3389/fcimb.2014.00098. eCollection 2014. Review.

5.

Meta'omic analytic techniques for studying the intestinal microbiome.

Morgan XC, Huttenhower C.

Gastroenterology. 2014 May;146(6):1437-1448.e1. doi: 10.1053/j.gastro.2014.01.049. Epub 2014 Jan 28. Review.

PMID:
24486053
6.

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing.

Ranjan R, Rani A, Metwally A, McGee HS, Perkins DL.

Biochem Biophys Res Commun. 2016 Jan 22;469(4):967-77. doi: 10.1016/j.bbrc.2015.12.083. Epub 2015 Dec 22.

7.

The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome.

Hannigan GD, Meisel JS, Tyldsley AS, Zheng Q, Hodkinson BP, SanMiguel AJ, Minot S, Bushman FD, Grice EA.

MBio. 2015 Oct 20;6(5):e01578-15. doi: 10.1128/mBio.01578-15.

8.

Deep sequencing of the oral microbiome reveals signatures of periodontal disease.

Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S, Stine OC, Hasturk H, Kasif S, Segrè D, Pop M, Amar S.

PLoS One. 2012;7(6):e37919. doi: 10.1371/journal.pone.0037919. Epub 2012 Jun 4.

9.

Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.

Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C.

Sci Rep. 2015 Nov 13;5:16498. doi: 10.1038/srep16498.

10.

Comparative metagenomic analysis of human gut microbiome composition using two different bioinformatic pipelines.

D'Argenio V, Casaburi G, Precone V, Salvatore F.

Biomed Res Int. 2014;2014:325340. doi: 10.1155/2014/325340. Epub 2014 Feb 25.

11.

Sequencing the human microbiome in health and disease.

Cox MJ, Cookson WO, Moffatt MF.

Hum Mol Genet. 2013 Oct 15;22(R1):R88-94. doi: 10.1093/hmg/ddt398. Epub 2013 Aug 13. Review.

PMID:
23943792
12.

The human gut microbiome, a taxonomic conundrum.

Sankar SA, Lagier JC, Pontarotti P, Raoult D, Fournier PE.

Syst Appl Microbiol. 2015 Jun;38(4):276-86. doi: 10.1016/j.syapm.2015.03.004. Epub 2015 Mar 25. Review.

PMID:
25864640
13.

Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome.

Bikel S, Valdez-Lara A, Cornejo-Granados F, Rico K, Canizales-Quinteros S, Soberón X, Del Pozo-Yauner L, Ochoa-Leyva A.

Comput Struct Biotechnol J. 2015 Jun 9;13:390-401. doi: 10.1016/j.csbj.2015.06.001. eCollection 2015. Review.

14.

Taxonomic and gene-centric metagenomics of the fecal microbiome of low and high feed conversion ratio (FCR) broilers.

Singh KM, Shah TM, Reddy B, Deshpande S, Rank DN, Joshi CG.

J Appl Genet. 2014 Feb;55(1):145-54. doi: 10.1007/s13353-013-0179-4. Epub 2013 Oct 18.

PMID:
24136777
15.

Faecalibacterium prausnitzii subspecies-level dysbiosis in the human gut microbiome underlying atopic dermatitis.

Song H, Yoo Y, Hwang J, Na YC, Kim HS.

J Allergy Clin Immunol. 2016 Mar;137(3):852-60. doi: 10.1016/j.jaci.2015.08.021. Epub 2015 Oct 1.

16.

[Advanced technologies for the human gut microbiome analysis].

Hattori M.

Nihon Rinsho Meneki Gakkai Kaishi. 2014;37(5):412-22. doi: 10.2177/jsci.37.412. Review. Japanese.

17.

Human distal gut microbiome.

Marchesi JR.

Environ Microbiol. 2011 Dec;13(12):3088-102. doi: 10.1111/j.1462-2920.2011.02574.x. Epub 2011 Sep 12. Review.

PMID:
21906225
18.

Moving pictures of the human microbiome.

Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R.

Genome Biol. 2011;12(5):R50. doi: 10.1186/gb-2011-12-5-r50.

19.

Determining microbial products and identifying molecular targets in the human microbiome.

Joice R, Yasuda K, Shafquat A, Morgan XC, Huttenhower C.

Cell Metab. 2014 Nov 4;20(5):731-41. doi: 10.1016/j.cmet.2014.10.003. Epub 2014 Nov 4. Review.

20.

Metagenomic pyrosequencing and microbial identification.

Petrosino JF, Highlander S, Luna RA, Gibbs RA, Versalovic J.

Clin Chem. 2009 May;55(5):856-66. doi: 10.1373/clinchem.2008.107565. Epub 2009 Mar 5. Review.

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