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Broad conditions favor the evolution of phase-variable loci.

Palmer ME, Lipsitch M, Moxon ER, Bayliss CD.

MBio. 2013 Jan 8;4(1):e00430-12. doi: 10.1128/mBio.00430-12.


Simple sequence repeats in Haemophilus influenzae.

Power PM, Sweetman WA, Gallacher NJ, Woodhall MR, Kumar GA, Moxon ER, Hood DW.

Infect Genet Evol. 2009 Mar;9(2):216-28. doi: 10.1016/j.meegid.2008.11.006.


DNA repeats identify novel virulence genes in Haemophilus influenzae.

Hood DW, Deadman ME, Jennings MP, Bisercic M, Fleischmann RD, Venter JC, Moxon ER.

Proc Natl Acad Sci U S A. 1996 Oct 1;93(20):11121-5.


The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases.

De Bolle X, Bayliss CD, Field D, van de Ven T, Saunders NJ, Hood DW, Moxon ER.

Mol Microbiol. 2000 Jan;35(1):211-22. Erratum in: Mol Microbiol 2002 Oct;46(1):293.


Mathematical and live meningococcal models for simple sequence repeat dynamics - coherent predictions and observations.

Alfsnes K, Raynaud X, Tønjum T, Ambur OH.

PLoS One. 2014 Jul 7;9(7):e101637. doi: 10.1371/journal.pone.0101637.


The simple sequence contingency loci of Haemophilus influenzae and Neisseria meningitidis.

Bayliss CD, Field D, Moxon ER.

J Clin Invest. 2001 Mar;107(6):657-62. Review. No abstract available.


Haemophilus influenzae phasevarions have evolved from type III DNA restriction systems into epigenetic regulators of gene expression.

Fox KL, Dowideit SJ, Erwin AL, Srikhanta YN, Smith AL, Jennings MP.

Nucleic Acids Res. 2007;35(15):5242-52.


Simple sequence repeats in Helicobacter canadensis and their role in phase variable expression and C-terminal sequence switching.

Snyder LA, Loman NJ, Linton JD, Langdon RR, Weinstock GM, Wren BW, Pallen MJ.

BMC Genomics. 2010 Jan 27;11:67. doi: 10.1186/1471-2164-11-67.


The phasevarion: phase variation of type III DNA methyltransferases controls coordinated switching in multiple genes.

Srikhanta YN, Fox KL, Jennings MP.

Nat Rev Microbiol. 2010 Mar;8(3):196-206. doi: 10.1038/nrmicro2283. Review.


The phasevarion: a genetic system controlling coordinated, random switching of expression of multiple genes.

Srikhanta YN, Maguire TL, Stacey KJ, Grimmond SM, Jennings MP.

Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5547-51.


Evolution of simple sequence repeat-mediated phase variation in bacterial genomes.

Bayliss CD, Palmer ME.

Ann N Y Acad Sci. 2012 Sep;1267:39-44. doi: 10.1111/j.1749-6632.2012.06584.x.


Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation.

Moxon R, Bayliss C, Hood D.

Annu Rev Genet. 2006;40:307-33. Review.


The evolution of phenotypic switching in subdivided populations.

Carja O, Liberman U, Feldman MW.

Genetics. 2014 Apr;196(4):1185-97. doi: 10.1534/genetics.114.161364.


The evolutionary emergence of stochastic phenotype switching in bacteria.

Rainey PB, Beaumont HJ, Ferguson GC, Gallie J, Kost C, Libby E, Zhang XX.

Microb Cell Fact. 2011 Aug 30;10 Suppl 1:S14. doi: 10.1186/1475-2859-10-S1-S14.


Prevalence of genetic differences in phosphorylcholine expression between nontypeable Haemophilus influenzae and Haemophilus haemolyticus.

McCrea KW, Xie J, Marrs CF, Gilsdorf JR.

BMC Microbiol. 2010 Nov 12;10:286. doi: 10.1186/1471-2180-10-286.


Determinants of phase variation rate and the fitness implications of differing rates for bacterial pathogens and commensals.

Bayliss CD.

FEMS Microbiol Rev. 2009 May;33(3):504-20. doi: 10.1111/j.1574-6976.2009.00162.x. Review.


Evolutionary pressures on simple sequence repeats in prokaryotic coding regions.

Lin WH, Kussell E.

Nucleic Acids Res. 2012 Mar;40(6):2399-413. doi: 10.1093/nar/gkr1078.

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