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Items: 1 to 20 of 106

1.

Prediction, microarray and northern blot analyses identify new intergenic small RNAs in Aliivibrio salmonicida.

Ahmad R, Hansen GÅ, Hansen H, Hjerde E, Pedersen HL, Paulsen SM, Nyrud ML, Strauss A, Willassen NP, Haugen P.

J Mol Microbiol Biotechnol. 2012;22(6):352-60. doi: 10.1159/000345769. Epub 2012 Dec 28.

PMID:
23295256
2.

Identification of novel growth phase- and media-dependent small non-coding RNAs in Streptococcus pyogenes M49 using intergenic tiling arrays.

Patenge N, Billion A, Raasch P, Normann J, Wisniewska-Kucper A, Retey J, Boisguérin V, Hartsch T, Hain T, Kreikemeyer B.

BMC Genomics. 2012 Oct 13;13:550. doi: 10.1186/1471-2164-13-550.

3.

Expression profiling reveals Spot 42 small RNA as a key regulator in the central metabolism of Aliivibrio salmonicida.

Hansen GA, Ahmad R, Hjerde E, Fenton CG, Willassen NP, Haugen P.

BMC Genomics. 2012 Jan 24;13:37. doi: 10.1186/1471-2164-13-37.

4.

Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae.

Liang H, Zhao YT, Zhang JQ, Wang XJ, Fang RX, Jia YT.

BMC Genomics. 2011 Jan 30;12:87. doi: 10.1186/1471-2164-12-87.

5.

sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes.

Livny J, Fogel MA, Davis BM, Waldor MK.

Nucleic Acids Res. 2005 Jul 26;33(13):4096-105. Print 2005.

6.

Identification of small RNAs in Francisella tularensis.

Postic G, Frapy E, Dupuis M, Dubail I, Livny J, Charbit A, Meibom KL.

BMC Genomics. 2010 Nov 10;11:625. doi: 10.1186/1471-2164-11-625.

7.

Computational prediction and transcriptional analysis of sRNAs in Nitrosomonas europaea.

Gvakharia BO, Tjaden B, Vajrala N, Sayavedra-Soto LA, Arp DJ.

FEMS Microbiol Lett. 2010 Nov;312(1):46-54. doi: 10.1111/j.1574-6968.2010.02095.x. Epub 2010 Sep 14.

9.

Small RNAs in the Vibrionaceae: an ocean still to be explored.

Nguyen AN, Jacq A.

Wiley Interdiscip Rev RNA. 2014 May-Jun;5(3):381-92. doi: 10.1002/wrna.1218. Epub 2014 Jan 23. Review.

PMID:
24458378
10.

Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets.

Shao Y, Bassler BL.

Mol Microbiol. 2012 Feb;83(3):599-611. doi: 10.1111/j.1365-2958.2011.07959.x. Epub 2012 Jan 9.

11.

A cluster of four homologous small RNAs modulates C1 metabolism and the pyruvate dehydrogenase complex in Rhodobacter sphaeroides under various stress conditions.

Billenkamp F, Peng T, Berghoff BA, Klug G.

J Bacteriol. 2015 May;197(10):1839-52. doi: 10.1128/JB.02475-14. Epub 2015 Mar 16.

12.

Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array.

Vercruysse M, Fauvart M, Cloots L, Engelen K, Thijs IM, Marchal K, Michiels J.

BMC Genomics. 2010 Jan 20;11:53. doi: 10.1186/1471-2164-11-53.

13.
14.

Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions.

Gierga G, Voss B, Hess WR.

ISME J. 2012 Aug;6(8):1544-57. doi: 10.1038/ismej.2011.215. Epub 2012 Jan 19.

15.

Identification of genes for small non-coding RNAs that belong to the regulon of the two-component regulatory system CiaRH in Streptococcus.

Marx P, Nuhn M, Kovács M, Hakenbeck R, Brückner R.

BMC Genomics. 2010 Nov 24;11:661. doi: 10.1186/1471-2164-11-661.

16.

Dynamics of Salmonella small RNA expression in non-growing bacteria located inside eukaryotic cells.

Ortega AD, Gonzalo-Asensio J, García-del Portillo F.

RNA Biol. 2012 Apr;9(4):469-88. doi: 10.4161/rna.19317. Epub 2012 Feb 16.

PMID:
22336761
17.

Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species.

González N, Heeb S, Valverde C, Kay E, Reimmann C, Junier T, Haas D.

BMC Genomics. 2008 Apr 13;9:167. doi: 10.1186/1471-2164-9-167.

18.

Bacterial sRNAs: regulation in stress.

Hoe CH, Raabe CA, Rozhdestvensky TS, Tang TH.

Int J Med Microbiol. 2013 Jul;303(5):217-29. doi: 10.1016/j.ijmm.2013.04.002. Epub 2013 Apr 11. Review.

PMID:
23660175
19.

Identification and functional characterization of sRNAs in Neisseria meningitidis.

Pannekoek Y, van der Ende A.

Methods Mol Biol. 2012;799:73-89. doi: 10.1007/978-1-61779-346-2_5.

PMID:
21993640
20.

Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile.

Soutourina OA, Monot M, Boudry P, Saujet L, Pichon C, Sismeiro O, Semenova E, Severinov K, Le Bouguenec C, Coppée JY, Dupuy B, Martin-Verstraete I.

PLoS Genet. 2013 May;9(5):e1003493. doi: 10.1371/journal.pgen.1003493. Epub 2013 May 9.

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