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Deep whole-genome sequencing of 100 southeast Asian Malays.

Wong LP, Ong RT, Poh WT, Liu X, Chen P, Li R, Lam KK, Pillai NE, Sim KS, Xu H, Sim NL, Teo SM, Foo JN, Tan LW, Lim Y, Koo SH, Gan LS, Cheng CY, Wee S, Yap EP, Ng PC, Lim WY, Soong R, Wenk MR, Aung T, Wong TY, Khor CC, Little P, Chia KS, Teo YY.

Am J Hum Genet. 2013 Jan 10;92(1):52-66. doi: 10.1016/j.ajhg.2012.12.005. Epub 2013 Jan 3.


Evaluating the coverage and potential of imputing the exome microarray with next-generation imputation using the 1000 Genomes Project.

Tantoso E, Wong LP, Li B, Saw WY, Xu W, Little P, Ong RT, Teo YY.

PLoS One. 2014 Sep 9;9(9):e106681. doi: 10.1371/journal.pone.0106681. eCollection 2014.


Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals.

Cheng AY, Teo YY, Ong RT.

Bioinformatics. 2014 Jun 15;30(12):1707-13. doi: 10.1093/bioinformatics/btu067. Epub 2014 Feb 19.


Insights into the genetic structure and diversity of 38 South Asian Indians from deep whole-genome sequencing.

Wong LP, Lai JK, Saw WY, Ong RT, Cheng AY, Pillai NE, Liu X, Xu W, Chen P, Foo JN, Tan LW, Koo SH, Soong R, Wenk MR, Lim WY, Khor CC, Little P, Chia KS, Teo YY.

PLoS Genet. 2014 May 15;10(5):e1004377. doi: 10.1371/journal.pgen.1004377. eCollection 2014 May.


Singapore Genome Variation Project: a haplotype map of three Southeast Asian populations.

Teo YY, Sim X, Ong RT, Tan AK, Chen J, Tantoso E, Small KS, Ku CS, Lee EJ, Seielstad M, Chia KS.

Genome Res. 2009 Nov;19(11):2154-62. doi: 10.1101/gr.095000.109. Epub 2009 Aug 21.


Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population.

Zhang W, Meehan J, Su Z, Ng HW, Shu M, Luo H, Ge W, Perkins R, Tong W, Hong H.

BMC Bioinformatics. 2014;15 Suppl 11:S6. doi: 10.1186/1471-2105-15-S11-S6. Epub 2014 Oct 21.


Low-pass genome-wide sequencing and variant inference using identity-by-descent in an isolated human population.

Gusev A, Shah MJ, Kenny EE, Ramachandran A, Lowe JK, Salit J, Lee CC, Levandowsky EC, Weaver TN, Doan QC, Peckham HE, McLaughlin SF, Lyons MR, Sheth VN, Stoffel M, De La Vega FM, Friedman JM, Breslow JL, Pe'er I.

Genetics. 2012 Feb;190(2):679-89. doi: 10.1534/genetics.111.134874. Epub 2011 Nov 30.


Distribution of the FcgammaRIIIa 176 F/V polymorphism amongst healthy Chinese, Malays and Asian Indians in Singapore.

Chong KT, Ho WF, Koo SH, Thompson P, Lee EJ.

Br J Clin Pharmacol. 2007 Mar;63(3):328-32. Epub 2006 Sep 19.


Evaluation of transethnic fine mapping with population-specific and cosmopolitan imputation reference panels in diverse Asian populations.

Wang X, Cheng CY, Liao J, Sim X, Liu J, Chia KS, Tai ES, Little P, Khor CC, Aung T, Wong TY, Teo YY.

Eur J Hum Genet. 2016 Apr;24(4):592-9. doi: 10.1038/ejhg.2015.150. Epub 2015 Jul 1.


Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies.

Hao K, Chudin E, McElwee J, Schadt EE.

BMC Genet. 2009 Jun 16;10:27. doi: 10.1186/1471-2156-10-27.


Dissecting the genetic structure and admixture of four geographical Malay populations.

Deng L, Hoh BP, Lu D, Saw WY, Twee-Hee Ong R, Kasturiratne A, de Silva HJ, Zilfalil BA, Kato N, Wickremasinghe AR, Teo YY, Xu S.

Sci Rep. 2015 Sep 23;5:14375. doi: 10.1038/srep14375.


Fine-scale population structure of Malays in Peninsular Malaysia and Singapore and implications for association studies.

Hoh BP, Deng L, Julia-Ashazila MJ, Zuraihan Z, Nur-Hasnah M, Nur-Shafawati AR, Hatin WI, Endom I, Zilfalil BA, Khalid Y, Xu S.

Hum Genomics. 2015 Jul 22;9:16. doi: 10.1186/s40246-015-0039-x.


Genome-wide landscapes of human local adaptation in Asia.

Qian W, Deng L, Lu D, Xu S.

PLoS One. 2013;8(1):e54224. doi: 10.1371/journal.pone.0054224. Epub 2013 Jan 22.


Genotype imputation for African Americans using data from HapMap phase II versus 1000 genomes projects.

Sung YJ, Gu CC, Tiwari HK, Arnett DK, Broeckel U, Rao DC.

Genet Epidemiol. 2012 Jul;36(5):508-16. doi: 10.1002/gepi.21647. Epub 2012 May 29.


Exploring the occurrence of classic selective sweeps in humans using whole-genome sequencing data sets.

Fagny M, Patin E, Enard D, Barreiro LB, Quintana-Murci L, Laval G.

Mol Biol Evol. 2014 Jul;31(7):1850-68. doi: 10.1093/molbev/msu118. Epub 2014 Apr 1.


SgD-CNV, a database for common and rare copy number variants in three Asian populations.

Xu H, Poh WT, Sim X, Ong RT, Suo C, Tay WT, Khor CC, Seielstad M, Liu J, Aung T, Tai ES, Wong TY, Chia KS, Teo YY.

Hum Mutat. 2011 Dec;32(12):1341-9. doi: 10.1002/humu.21601. Epub 2011 Sep 30.


High-throughput sequencing of complete human mtDNA genomes from the Philippines.

Gunnarsdóttir ED, Li M, Bauchet M, Finstermeier K, Stoneking M.

Genome Res. 2011 Jan;21(1):1-11. doi: 10.1101/gr.107615.110. Epub 2010 Dec 8.


The population genomic landscape of human genetic structure, admixture history and local adaptation in Peninsular Malaysia.

Deng L, Hoh BP, Lu D, Fu R, Phipps ME, Li S, Nur-Shafawati AR, Hatin WI, Ismail E, Mokhtar SS, Jin L, Zilfalil BA, Marshall CR, Scherer SW, Al-Mulla F, Xu S.

Hum Genet. 2014 Sep;133(9):1169-85. doi: 10.1007/s00439-014-1459-8. Epub 2014 Jun 11.


Ancestry prediction in Singapore population samples using the Illumina ForenSeq kit.

Ramani A, Wong Y, Tan SZ, Shue BH, Syn C.

Forensic Sci Int Genet. 2017 Nov;31:171-179. doi: 10.1016/j.fsigen.2017.08.013. Epub 2017 Aug 15.


Variation of the platelet glycoprotein IIIa PI(A1/A2) allele frequencies in the three ethnic groups of Singapore.

Lim J, Lal S, Ng KC, Ng KS, Saha N, Heng CK.

Int J Cardiol. 2003 Aug;90(2-3):269-73.


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