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Items: 1 to 20 of 124

1.

GLAD4U: deriving and prioritizing gene lists from PubMed literature.

Jourquin J, Duncan D, Shi Z, Zhang B.

BMC Genomics. 2012;13 Suppl 8:S20. doi: 10.1186/1471-2164-13-S8-S20. Epub 2012 Dec 17.

2.

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

Hur J, Schuyler AD, States DJ, Feldman EL.

Bioinformatics. 2009 Mar 15;25(6):838-40. doi: 10.1093/bioinformatics/btp049. Epub 2009 Feb 2.

3.
4.

B.E.A.R. GeneInfo: a tool for identifying gene-related biomedical publications through user modifiable queries.

Zhou G, Wen X, Liu H, Schlicht MJ, Hessner MJ, Tonellato PJ, Datta MW.

BMC Bioinformatics. 2004 Apr 29;5:46.

5.

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

BMC Bioinformatics. 2009 Feb 3;10:48. doi: 10.1186/1471-2105-10-48.

6.

G-Bean: an ontology-graph based web tool for biomedical literature retrieval.

Wang JZ, Zhang Y, Dong L, Li L, Srimani PK, Yu PS.

BMC Bioinformatics. 2014;15 Suppl 12:S1. doi: 10.1186/1471-2105-15-S12-S1. Epub 2014 Nov 6.

8.

PaLS: filtering common literature, biological terms and pathway information.

Alibés A, Cañada A, Díaz-Uriarte R.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W364-7. doi: 10.1093/nar/gkn251. Epub 2008 May 8.

9.

Concept-based query expansion for retrieving gene related publications from MEDLINE.

Matos S, Arrais JP, Maia-Rodrigues J, Oliveira JL.

BMC Bioinformatics. 2010 Apr 28;11:212. doi: 10.1186/1471-2105-11-212.

10.

PDQ Wizard: automated prioritization and characterization of gene and protein lists using biomedical literature.

Grimes GR, Wen TQ, Mewissen M, Baxter RM, Moodie S, Beattie JS, Ghazal P.

Bioinformatics. 2006 Aug 15;22(16):2055-7. Epub 2006 Jun 29.

PMID:
16809392
11.

Semantically linking and browsing PubMed abstracts with gene ontology.

Vanteru BC, Shaik JS, Yeasin M.

BMC Genomics. 2008;9 Suppl 1:S10. doi: 10.1186/1471-2164-9-S1-S10.

12.
13.

Utilization of the PICO framework to improve searching PubMed for clinical questions.

Schardt C, Adams MB, Owens T, Keitz S, Fontelo P.

BMC Med Inform Decis Mak. 2007 Jun 15;7:16.

14.

HubMed: a web-based biomedical literature search interface.

Eaton AD.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W745-7.

15.

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143. doi: 10.1186/1471-2105-9-143.

16.

PubMed-EX: a web browser extension to enhance PubMed search with text mining features.

Tsai RT, Dai HJ, Lai PT, Huang CH.

Bioinformatics. 2009 Nov 15;25(22):3031-2. doi: 10.1093/bioinformatics/btp475. Epub 2009 Aug 4.

PMID:
19654114
17.

Data preparation and interannotator agreement: BioCreAtIvE task 1B.

Colosimo ME, Morgan AA, Yeh AS, Colombe JB, Hirschman L.

BMC Bioinformatics. 2005;6 Suppl 1:S12. Epub 2005 May 24.

18.

GeneBrowser 2: an application to explore and identify common biological traits in a set of genes.

Arrais JP, Fernandes J, Pereira J, Oliveira JL.

BMC Bioinformatics. 2010 Jul 21;11:389. doi: 10.1186/1471-2105-11-389.

19.

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.

Reimand J, Kull M, Peterson H, Hansen J, Vilo J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W193-200. Epub 2007 May 3.

20.

MiSearch adaptive pubMed search tool.

States DJ, Ade AS, Wright ZC, Bookvich AV, Athey BD.

Bioinformatics. 2009 Apr 1;25(7):974-6. doi: 10.1093/bioinformatics/btn033. Epub 2008 Mar 6.

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