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Items: 1 to 20 of 107

1.

Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.

Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.

Mol Cell Proteomics. 2013 Mar;12(3):825-31. doi: 10.1074/mcp.O112.027094. Epub 2012 Dec 24.

2.

Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.

Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.

Mol Cell Proteomics. 2012 May;11(5):148-59. doi: 10.1074/mcp.M111.016857. Epub 2012 Apr 14.

3.

Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.

Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.

J Proteome Res. 2012 Sep 7;11(9):4722-32. doi: 10.1021/pr300536k. Epub 2012 Aug 15.

4.

Global ubiquitination analysis by SILAC in mammalian cells.

Wu Z, Na CH, Tan H, Peng J.

Methods Mol Biol. 2014;1188:149-60. doi: 10.1007/978-1-4939-1142-4_11.

PMID:
25059610
5.

A comprehensive method for detecting ubiquitinated substrates using TR-TUBE.

Yoshida Y, Saeki Y, Murakami A, Kawawaki J, Tsuchiya H, Yoshihara H, Shindo M, Tanaka K.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4630-5. doi: 10.1073/pnas.1422313112. Epub 2015 Mar 31.

6.

Analysis of ubiquitinated proteome by quantitative mass spectrometry.

Na CH, Peng J.

Methods Mol Biol. 2012;893:417-29. doi: 10.1007/978-1-61779-885-6_26.

7.

Large-scale identification of ubiquitination sites by mass spectrometry.

Udeshi ND, Mertins P, Svinkina T, Carr SA.

Nat Protoc. 2013 Oct;8(10):1950-60. doi: 10.1038/nprot.2013.120. Epub 2013 Sep 19.

8.

Proteome-wide quantitation by SILAC.

Rigbolt KT, Blagoev B.

Methods Mol Biol. 2010;658:187-204. doi: 10.1007/978-1-60761-780-8_11.

PMID:
20839105
9.

Characterizing ubiquitination sites by peptide-based immunoaffinity enrichment.

Bustos D, Bakalarski CE, Yang Y, Peng J, Kirkpatrick DS.

Mol Cell Proteomics. 2012 Dec;11(12):1529-40. doi: 10.1074/mcp.R112.019117. Epub 2012 Jun 23. Review.

10.

A COFRADIC protocol to study protein ubiquitination.

Stes E, Laga M, Walton A, Samyn N, Timmerman E, De Smet I, Goormachtig S, Gevaert K.

J Proteome Res. 2014 Jun 6;13(6):3107-13. doi: 10.1021/pr4012443. Epub 2014 May 20.

PMID:
24816145
11.

A data set of human endogenous protein ubiquitination sites.

Shi Y, Chan DW, Jung SY, Malovannaya A, Wang Y, Qin J.

Mol Cell Proteomics. 2011 May;10(5):M110.002089. doi: 10.1074/mcp.M110.002089. Epub 2010 Oct 24.

12.

Stable isotope labeling with amino acids in Drosophila for quantifying proteins and modifications.

Xu P, Tan H, Duong DM, Yang Y, Kupsco J, Moberg KH, Li H, Jin P, Peng J.

J Proteome Res. 2012 Sep 7;11(9):4403-12. doi: 10.1021/pr300613c. Epub 2012 Aug 10.

13.

Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis.

Kim DY, Scalf M, Smith LM, Vierstra RD.

Plant Cell. 2013 May;25(5):1523-40. doi: 10.1105/tpc.112.108613. Epub 2013 May 10.

15.

A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.

Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.

Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. doi: 10.1074/mcp.M111.013284. Epub 2011 Sep 1.

16.

Large-Scale Identification of the Arginine Methylome by Mass Spectrometry.

Sylvestersen KB, Nielsen ML.

Curr Protoc Protein Sci. 2015 Nov 2;82:24.7.1-17. doi: 10.1002/0471140864.ps2407s82.

PMID:
26521714
17.
18.

Maximizing early detection of esophageal squamous cell carcinoma via SILAC-proteomics.

Lee KK, Todorova K, Mandinova A.

Cancer Biol Ther. 2010 Oct 15;10(8):811-3. Epub 2010 Oct 15. No abstract available.

19.

Comprehensive profiling of protein ubiquitination for drug discovery.

Xu G, Jaffrey SR.

Curr Pharm Des. 2013;19(18):3315-28. Review.

PMID:
23151132
20.

Multiplexed quantification for data-independent acquisition.

Minogue CE, Hebert AS, Rensvold JW, Westphall MS, Pagliarini DJ, Coon JJ.

Anal Chem. 2015 Mar 3;87(5):2570-5. doi: 10.1021/ac503593d. Epub 2015 Feb 11.

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