Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 335


Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol.

Hajibabaei M, Spall JL, Shokralla S, van Konynenburg S.

BMC Ecol. 2012 Dec 23;12:28. doi: 10.1186/1472-6785-12-28.


Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos.

Hajibabaei M, Shokralla S, Zhou X, Singer GA, Baird DJ.

PLoS One. 2011 Apr 13;6(4):e17497. doi: 10.1371/journal.pone.0017497.


Evaluating ethanol-based sample preservation to facilitate use of DNA barcoding in routine freshwater biomonitoring programs using benthic macroinvertebrates.

Stein ED, White BP, Mazor RD, Miller PE, Pilgrim EM.

PLoS One. 2013;8(1):e51273. doi: 10.1371/journal.pone.0051273. Epub 2013 Jan 4.


Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates.

Dowle EJ, Pochon X, C Banks J, Shearer K, Wood SA.

Mol Ecol Resour. 2016 Sep;16(5):1240-54. doi: 10.1111/1755-0998.12488. Epub 2015 Dec 18.


Is DNA barcoding actually cheaper and faster than traditional morphological methods: results from a survey of freshwater bioassessment efforts in the United States?

Stein ED, Martinez MC, Stiles S, Miller PE, Zakharov EV.

PLoS One. 2014 Apr 22;9(4):e95525. doi: 10.1371/journal.pone.0095525. eCollection 2014.


Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities.

Vivien R, Lejzerowicz F, Pawlowski J.

PLoS One. 2016 Feb 11;11(2):e0148644. doi: 10.1371/journal.pone.0148644. eCollection 2016.


Species Identification in Malaise Trap Samples by DNA Barcoding Based on NGS Technologies and a Scoring Matrix.

Morinière J, Cancian de Araujo B, Lam AW, Hausmann A, Balke M, Schmidt S, Hendrich L, Doczkal D, Fartmann B, Arvidsson S, Haszprunar G.

PLoS One. 2016 May 18;11(5):e0155497. doi: 10.1371/journal.pone.0155497. eCollection 2016.


Detecting invertebrate species in archived collections using next-generation sequencing.

Carew ME, Metzeling L, St Clair R, Hoffmann AA.

Mol Ecol Resour. 2017 Sep;17(5):915-930. doi: 10.1111/1755-0998.12644. Epub 2017 Feb 27.


Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing.

Gibson JF, Shokralla S, Curry C, Baird DJ, Monk WA, King I, Hajibabaei M.

PLoS One. 2015 Oct 21;10(10):e0138432. doi: 10.1371/journal.pone.0138432. eCollection 2015.


Improving environmental and biodiversity monitoring in the Baltic Sea using DNA barcoding of Chironomidae (Diptera).

Brodin Y, Ejdung G, Strandberg J, Lyrholm T.

Mol Ecol Resour. 2013 Nov;13(6):996-1004. doi: 10.1111/1755-0998.12053. Epub 2012 Dec 24.


Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics.

Gibson J, Shokralla S, Porter TM, King I, van Konynenburg S, Janzen DH, Hallwachs W, Hajibabaei M.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8007-12. doi: 10.1073/pnas.1406468111. Epub 2014 May 7.


Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens.

Shokralla S, Gibson JF, Nikbakht H, Janzen DH, Hallwachs W, Hajibabaei M.

Mol Ecol Resour. 2014 Sep;14(5):892-901. doi: 10.1111/1755-0998.12236. Epub 2014 Feb 19.


Metabarcoding Marine Sediments: Preparation of Amplicon Libraries.

Fonseca VG, Lallias D.

Methods Mol Biol. 2016;1452:183-96. doi: 10.1007/978-1-4939-3774-5_12.


A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents.

Leray M, Yang JY, Meyer CP, Mills SC, Agudelo N, Ranwez V, Boehm JT, Machida RJ.

Front Zool. 2013 Jun 14;10:34. doi: 10.1186/1742-9994-10-34. eCollection 2013.


Assessing macroinvertebrate biodiversity in freshwater ecosystems: advances and challenges in DNA-based approaches.

Pfrender ME, Hawkins CP, Bagley M, Courtney GW, Creutzburg BR, Epler JH, Fend S, Schindel D, Ferrington LC Jr, Hartzell PL, Jackson S, Larsen DP, Lévesque A, Morse JC, Petersen MJ, Ruiter D, Whiting M.

Q Rev Biol. 2010 Sep;85(3):319-40. Review.


Increased accuracy of species lists developed for alpine lakes using morphology and cytochrome oxidase I for identification of specimens.

Deiner K, Knapp RA, Boiano DM, May B.

Mol Ecol Resour. 2013 Sep;13(5):820-31. doi: 10.1111/1755-0998.12130. Epub 2013 Jun 18.


Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies.

Zimmermann J, Glöckner G, Jahn R, Enke N, Gemeinholzer B.

Mol Ecol Resour. 2015 May;15(3):526-42. doi: 10.1111/1755-0998.12336. Epub 2014 Oct 20.


Performance of two Southern California benthic community condition indices using species abundance and presence-only data: relevance to DNA barcoding.

Ranasinghe JA, Stein ED, Miller PE, Weisberg SB.

PLoS One. 2012;7(8):e40875. doi: 10.1371/journal.pone.0040875. Epub 2012 Aug 7.


A practical method for barcoding and size-trimming PCR templates for amplicon sequencing.

Mäki A, Rissanen AJ, Tiirola M.

Biotechniques. 2016 Feb 1;60(2):88-90. doi: 10.2144/000114380. eCollection 2016 Feb.

Supplemental Content

Support Center