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Items: 1 to 20 of 81

1.

ChEMBLSpace--a graphical explorer of the chemogenomic space covered by the ChEMBL database.

Fechner N, Papadatos G, Evans D, Morphy JR, Brewerton SC, Thorner D, Bodkin M.

Bioinformatics. 2013 Feb 15;29(4):523-4. doi: 10.1093/bioinformatics/bts711. Epub 2012 Dec 20.

PMID:
23257198
2.

Phenol-Explorer 2.0: a major update of the Phenol-Explorer database integrating data on polyphenol metabolism and pharmacokinetics in humans and experimental animals.

Rothwell JA, Urpi-Sarda M, Boto-Ordoñez M, Knox C, Llorach R, Eisner R, Cruz J, Neveu V, Wishart D, Manach C, Andres-Lacueva C, Scalbert A.

Database (Oxford). 2012 Aug 9;2012:bas031. doi: 10.1093/database/bas031. Print 2012.

3.

The ChEMBL bioactivity database: an update.

Bento AP, Gaulton A, Hersey A, Bellis LJ, Chambers J, Davies M, Krüger FA, Light Y, Mak L, McGlinchey S, Nowotka M, Papadatos G, Santos R, Overington JP.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1083-90. doi: 10.1093/nar/gkt1031. Epub 2013 Nov 7.

4.

MQN-mapplet: visualization of chemical space with interactive maps of DrugBank, ChEMBL, PubChem, GDB-11, and GDB-13.

Awale M, van Deursen R, Reymond JL.

J Chem Inf Model. 2013 Feb 25;53(2):509-18. doi: 10.1021/ci300513m. Epub 2013 Jan 22.

5.

Growth of ligand-target interaction data in ChEMBL is associated with increasing and activity measurement-dependent compound promiscuity.

Hu Y, Bajorath J.

J Chem Inf Model. 2012 Oct 22;52(10):2550-8. doi: 10.1021/ci3003304. Epub 2012 Sep 28.

PMID:
22978710
6.

Xlandscape: the graphical display of word frequencies in sequences.

Levy S, Compagnoni L, Myers EW, Stormo GD.

Bioinformatics. 1998;14(1):74-80.

PMID:
9520504
7.

BioSynther: a customized biosynthetic potential explorer.

Tu W, Zhang H, Liu J, Hu QN.

Bioinformatics. 2016 Feb 1;32(3):472-3. doi: 10.1093/bioinformatics/btv599. Epub 2015 Oct 14.

PMID:
26471457
8.

Visualization and virtual screening of the chemical universe database GDB-17.

Ruddigkeit L, Blum LC, Reymond JL.

J Chem Inf Model. 2013 Jan 28;53(1):56-65. doi: 10.1021/ci300535x. Epub 2013 Jan 9.

PMID:
23259841
9.

XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences.

Gouzy J, Eugéne P, Greene EA, Kahn D, Corpet F.

Comput Appl Biosci. 1997 Dec;13(6):601-8.

PMID:
9475988
10.

CHIRBASE, a graphical molecular database on the separation of enantiomers by liquid-, supercritical fluid-, and gas chromatography.

Koppenhoefer B, Nothdurft A, Pierrot-Sanders J, Piras P, Popescu C, Roussel C, Stiebler M, Trettin U.

Chirality. 1993;5(4):213-9.

PMID:
8357720
11.

GPFrontend and GPGraphics: graphical analysis tools for genetic association studies.

Uebe S, Pasutto F, Krumbiegel M, Schanze D, Ekici AB, Reis A.

BMC Bioinformatics. 2010 Sep 21;11:472. doi: 10.1186/1471-2105-11-472.

12.

CGH-Explorer: a program for analysis of array-CGH data.

Lingjaerde OC, Baumbusch LO, Liestøl K, Glad IK, Børresen-Dale AL.

Bioinformatics. 2005 Mar;21(6):821-2. Epub 2004 Nov 5.

PMID:
15531610
13.

Protein function prediction using the Protein Link EXplorer (PLEX).

Date SV, Marcotte EM.

Bioinformatics. 2005 May 15;21(10):2558-9. Epub 2005 Feb 8.

PMID:
15701682
14.
15.

PTID: an integrated web resource and computational tool for agrochemical discovery.

Gong J, Liu X, Cao X, Diao Y, Gao D, Li H, Qian X.

Bioinformatics. 2013 Jan 15;29(2):292-4. doi: 10.1093/bioinformatics/bts651. Epub 2012 Nov 18.

PMID:
23162083
16.

KMWin--a convenient tool for graphical presentation of results from Kaplan-Meier survival time analysis.

Gross A, Ziepert M, Scholz M.

PLoS One. 2012;7(6):e38960. doi: 10.1371/journal.pone.0038960. Epub 2012 Jun 15.

17.

GRAPE: GRaphical Abstracted Protein Explorer.

Cipriano G, Wesenberg G, Grim T, Phillips GN Jr, Gleicher M.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W595-601. doi: 10.1093/nar/gkq398. Epub 2010 May 12.

18.

sMOL Explorer: an open source, web-enabled database and exploration tool for Small MOLecules datasets.

Ingsriswang S, Pacharawongsakda E.

Bioinformatics. 2007 Sep 15;23(18):2498-500. Epub 2007 Jul 27.

PMID:
17660205
19.

Gaining knowledge from previously unexplained spectra-application of the PTM-Explorer software to detect PTM in HUPO BPP MS/MS data.

Chamrad DC, Körting G, Schäfer H, Stephan C, Thiele H, Apweiler R, Meyer HE, Marcus K, Blüggel M.

Proteomics. 2006 Sep;6(18):5048-58.

PMID:
16912973
20.

Chemotography for multi-target SAR analysis in the context of biological pathways.

Lounkine E, Kutchukian P, Petrone P, Davies JW, Glick M.

Bioorg Med Chem. 2012 Sep 15;20(18):5416-27. doi: 10.1016/j.bmc.2012.02.034. Epub 2012 Feb 20.

PMID:
22405595

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