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Items: 1 to 20 of 103

1.

Recent progress using systems biology approaches to better understand molecular mechanisms of immunity.

Gottschalk RA, Martins AJ, Sjoelund V, Angermann BR, Lin B, Germain RN.

Semin Immunol. 2013 Oct 31;25(3):201-8. doi: 10.1016/j.smim.2012.11.002. Epub 2012 Dec 11. Review.

2.

Dynamic modeling and analysis of cancer cellular network motifs.

Cloutier M, Wang E.

Integr Biol (Camb). 2011 Jul;3(7):724-32. doi: 10.1039/c0ib00145g. Epub 2011 Jun 15. Review.

PMID:
21674097
3.

Third-Kind Encounters in Biomedicine: Immunology Meets Mathematics and Informatics to Become Quantitative and Predictive.

Eberhardt M, Lai X, Tomar N, Gupta S, Schmeck B, Steinkasserer A, Schuler G, Vera J.

Methods Mol Biol. 2016;1386:135-79. doi: 10.1007/978-1-4939-3283-2_9. Review.

PMID:
26677184
4.

A global "imaging'' view on systems approaches in immunology.

Ludewig B, Stein JV, Sharpe J, Cervantes-Barragan L, Thiel V, Bocharov G.

Eur J Immunol. 2012 Dec;42(12):3116-25. doi: 10.1002/eji.201242508. Review.

5.

Complexity of receptor tyrosine kinase signal processing.

Volinsky N, Kholodenko BN.

Cold Spring Harb Perspect Biol. 2013 Aug 1;5(8):a009043. doi: 10.1101/cshperspect.a009043. Review.

6.

Strategies to discover regulatory circuits of the mammalian immune system.

Amit I, Regev A, Hacohen N.

Nat Rev Immunol. 2011 Nov 18;11(12):873-80. doi: 10.1038/nri3109. Review.

7.

Network representations of immune system complexity.

Subramanian N, Torabi-Parizi P, Gottschalk RA, Germain RN, Dutta B.

Wiley Interdiscip Rev Syst Biol Med. 2015 Jan-Feb;7(1):13-38. doi: 10.1002/wsbm.1288. Epub 2015 Jan 27. Review.

8.

Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic.

Khan FM, Schmitz U, Nikolov S, Engelmann D, PĆ¼tzer BM, Wolkenhauer O, Vera J.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt B):289-98. doi: 10.1016/j.bbapap.2013.05.007. Epub 2013 May 18.

PMID:
23692959
9.

Systems biology approaches to dissect mammalian innate immunity.

Shapira SD, Hacohen N.

Curr Opin Immunol. 2011 Feb;23(1):71-7. doi: 10.1016/j.coi.2010.10.022. Epub 2010 Nov 24. Review.

10.

The big and intricate dreams of little organelles: Embracing complexity in the study of membrane traffic.

Liu AP, Botelho RJ, Antonescu CN.

Traffic. 2017 Sep;18(9):567-579. doi: 10.1111/tra.12497. Epub 2017 Jul 4. Review.

PMID:
28574194
11.

Systems immunology: a survey of modeling formalisms, applications and simulation tools.

Narang V, Decraene J, Wong SY, Aiswarya BS, Wasem AR, Leong SR, Gouaillard A.

Immunol Res. 2012 Sep;53(1-3):251-65. doi: 10.1007/s12026-012-8305-7. Review.

PMID:
22528121
12.

Computational systems biology and dose-response modeling in relation to new directions in toxicity testing.

Zhang Q, Bhattacharya S, Andersen ME, Conolly RB.

J Toxicol Environ Health B Crit Rev. 2010 Feb;13(2-4):253-76. doi: 10.1080/10937404.2010.483943.

PMID:
20574901
13.

Arabidopsis thaliana as a model organism in systems biology.

Van Norman JM, Benfey PN.

Wiley Interdiscip Rev Syst Biol Med. 2009 Nov-Dec;1(3):372-9. doi: 10.1002/wsbm.25. Review.

14.

Solving Immunology?

Vodovotz Y, Xia A, Read EL, Bassaganya-Riera J, Hafler DA, Sontag E, Wang J, Tsang JS, Day JD, Kleinstein SH, Butte AJ, Altman MC, Hammond R, Sealfon SC.

Trends Immunol. 2017 Feb;38(2):116-127. doi: 10.1016/j.it.2016.11.006. Epub 2016 Dec 13. Review.

PMID:
27986392
15.

The development of a fully-integrated immune response model (FIRM) simulator of the immune response through integration of multiple subset models.

Palsson S, Hickling TP, Bradshaw-Pierce EL, Zager M, Jooss K, O'Brien PJ, Spilker ME, Palsson BO, Vicini P.

BMC Syst Biol. 2013 Sep 28;7:95. doi: 10.1186/1752-0509-7-95.

16.

Dynamic cross-talk analysis among TNF-R, TLR-4 and IL-1R signalings in TNFalpha-induced inflammatory responses.

Yang SK, Wang YC, Chao CC, Chuang YJ, Lan CY, Chen BS.

BMC Med Genomics. 2010 May 24;3:19. doi: 10.1186/1755-8794-3-19.

18.

Introduction: Cancer Gene Networks.

Clarke R.

Methods Mol Biol. 2017;1513:1-9.

PMID:
27807826
19.

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

Lynn DJ, Winsor GL, Chan C, Richard N, Laird MR, Barsky A, Gardy JL, Roche FM, Chan TH, Shah N, Lo R, Naseer M, Que J, Yau M, Acab M, Tulpan D, Whiteside MD, Chikatamarla A, Mah B, Munzner T, Hokamp K, Hancock RE, Brinkman FS.

Mol Syst Biol. 2008;4:218. doi: 10.1038/msb.2008.55. Epub 2008 Sep 2.

20.

Democratizing systems immunology with modular transcriptional repertoire analyses.

Chaussabel D, Baldwin N.

Nat Rev Immunol. 2014 Apr;14(4):271-80. doi: 10.1038/nri3642. Review.

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