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Items: 1 to 20 of 439

1.

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study.

Sun L, Zhang Z, Bailey TL, Perkins AC, Tallack MR, Xu Z, Liu H.

BMC Bioinformatics. 2012 Dec 13;13:331. doi: 10.1186/1471-2105-13-331.

2.

In silico prediction of long intergenic non-coding RNAs in sheep.

Bakhtiarizadeh MR, Hosseinpour B, Arefnezhad B, Shamabadi N, Salami SA.

Genome. 2016 Apr;59(4):263-75. doi: 10.1139/gen-2015-0141. Epub 2016 Feb 19.

PMID:
27002388
3.

PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme.

Li A, Zhang J, Zhou Z.

BMC Bioinformatics. 2014 Sep 19;15:311. doi: 10.1186/1471-2105-15-311.

4.

Predicting the functions of long noncoding RNAs using RNA-seq based on Bayesian network.

Xiao Y, Lv Y, Zhao H, Gong Y, Hu J, Li F, Xu J, Bai J, Yu F, Li X.

Biomed Res Int. 2015;2015:839590. doi: 10.1155/2015/839590. Epub 2015 Feb 28.

5.

Genome-wide identification and characterization of long non-coding RNAs in developmental skeletal muscle of fetal goat.

Zhan S, Dong Y, Zhao W, Guo J, Zhong T, Wang L, Li L, Zhang H.

BMC Genomics. 2016 Aug 22;17:666. doi: 10.1186/s12864-016-3009-3.

6.

Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin.

Tsoi LC, Iyer MK, Stuart PE, Swindell WR, Gudjonsson JE, Tejasvi T, Sarkar MK, Li B, Ding J, Voorhees JJ, Kang HM, Nair RP, Chinnaiyan AM, Abecasis GR, Elder JT.

Genome Biol. 2015 Jan 30;16:24. doi: 10.1186/s13059-014-0570-4.

7.

Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs.

Chen J, Shishkin AA, Zhu X, Kadri S, Maza I, Guttman M, Hanna JH, Regev A, Garber M.

Genome Biol. 2016 Feb 2;17:19. doi: 10.1186/s13059-016-0880-9.

8.

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.

Billerey C, Boussaha M, Esquerré D, Rebours E, Djari A, Meersseman C, Klopp C, Gautheret D, Rocha D.

BMC Genomics. 2014 Jun 19;15:499. doi: 10.1186/1471-2164-15-499.

9.

Long noncoding RNA repertoire in chicken liver and adipose tissue.

Muret K, Klopp C, Wucher V, Esquerré D, Legeai F, Lecerf F, Désert C, Boutin M, Jehl F, Acloque H, Giuffra E, Djebali S, Foissac S, Derrien T, Lagarrigue S.

Genet Sel Evol. 2017 Jan 10;49(1):6. doi: 10.1186/s12711-016-0275-0.

10.

Identification and evolutionary analysis of long non-coding RNAs in zebra finch.

Chen CK, Yu CP, Li SC, Wu SM, Lu MJ, Chen YH, Chen DR, Ng CS, Ting CT, Li WH.

BMC Genomics. 2017 Jan 31;18(1):117. doi: 10.1186/s12864-017-3506-z.

11.

Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogaster.

Chen MJ, Chen LK, Lai YS, Lin YY, Wu DC, Tung YA, Liu KY, Shih HT, Chen YJ, Lin YL, Ma LT, Huang JL, Wu PC, Hong MY, Chu FH, Wu JT, Li WH, Chen CY.

BMC Genomics. 2016 Mar 11;17:220. doi: 10.1186/s12864-016-2457-0.

12.

Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma.

Verma A, Jiang Y, Du W, Fairchild L, Melnick A, Elemento O.

Genome Med. 2015 Nov 1;7:110. doi: 10.1186/s13073-015-0230-7.

13.

The Long Noncoding RNA Transcriptome of Dictyostelium discoideum Development.

Rosengarten RD, Santhanam B, Kokosar J, Shaulsky G.

G3 (Bethesda). 2017 Feb 9;7(2):387-398. doi: 10.1534/g3.116.037150.

14.

Identifying and functionally characterizing tissue-specific and ubiquitously expressed human lncRNAs.

Jiang C, Li Y, Zhao Z, Lu J, Chen H, Ding N, Wang G, Xu J, Li X.

Oncotarget. 2016 Feb 9;7(6):7120-33. doi: 10.18632/oncotarget.6859.

15.

Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq).

Babski J, Haas KA, Näther-Schindler D, Pfeiffer F, Förstner KU, Hammelmann M, Hilker R, Becker A, Sharma CM, Marchfelder A, Soppa J.

BMC Genomics. 2016 Aug 12;17(1):629. doi: 10.1186/s12864-016-2920-y.

16.

FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome.

Wucher V, Legeai F, Hédan B, Rizk G, Lagoutte L, Leeb T, Jagannathan V, Cadieu E, David A, Lohi H, Cirera S, Fredholm M, Botherel N, Leegwater PAJ, Le Béguec C, Fieten H, Johnson J, Alföldi J, André C, Lindblad-Toh K, Hitte C, Derrien T.

Nucleic Acids Res. 2017 May 5;45(8):e57. doi: 10.1093/nar/gkw1306.

17.

Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing.

Li T, Wang S, Wu R, Zhou X, Zhu D, Zhang Y.

Genomics. 2012 May;99(5):292-8. doi: 10.1016/j.ygeno.2012.02.003. Epub 2012 Feb 20.

18.
19.

Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer.

Müller S, Raulefs S, Bruns P, Afonso-Grunz F, Plötner A, Thermann R, Jäger C, Schlitter AM, Kong B, Regel I, Roth WK, Rotter B, Hoffmeier K, Kahl G, Koch I, Theis FJ, Kleeff J, Winter P, Michalski CW.

Mol Cancer. 2015 Apr 25;14:94. doi: 10.1186/s12943-015-0358-5. Erratum in: Mol Cancer. 2015;14:144.

20.

Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq.

Chen J, Quan M, Zhang D.

Planta. 2015 Jan;241(1):125-43. doi: 10.1007/s00425-014-2168-1. Epub 2014 Sep 18.

PMID:
25230698

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