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Items: 1 to 20 of 92

1.

Rule extraction in gene-disease relationship discovery.

Hou WJ, Chen HY.

Gene. 2013 Apr 10;518(1):132-8. doi: 10.1016/j.gene.2012.11.060. Epub 2012 Dec 9.

PMID:
23235120
2.

Text mining in livestock animal science: introducing the potential of text mining to animal sciences.

Sahadevan S, Hofmann-Apitius M, Schellander K, Tesfaye D, Fluck J, Friedrich CM.

J Anim Sci. 2012 Oct;90(10):3666-76. doi: 10.2527/jas.2011-4841. Epub 2012 Jun 4.

3.

Application of automatic mutation-gene pair extraction to diseases.

Erdogmus M, Sezerman OU.

J Bioinform Comput Biol. 2007 Dec;5(6):1261-75.

PMID:
18172928
4.

An automated procedure to identify biomedical articles that contain cancer-associated gene variants.

McDonald R, Scott Winters R, Ankuda CK, Murphy JA, Rogers AE, Pereira F, Greenblatt MS, White PS.

Hum Mutat. 2006 Sep;27(9):957-64.

PMID:
16865690
5.

Integrative mining of traditional Chinese medicine literature and MEDLINE for functional gene networks.

Zhou X, Liu B, Wu Z, Feng Y.

Artif Intell Med. 2007 Oct;41(2):87-104. Epub 2007 Sep 5.

PMID:
17804209
6.

Resolving anaphoras for the extraction of drug-drug interactions in pharmacological documents.

Segura-Bedmar I, Crespo M, de Pablo-Sánchez C, Martínez P.

BMC Bioinformatics. 2010 Apr 16;11 Suppl 2:S1. doi: 10.1186/1471-2105-11-S2-S1.

7.

Cross-Ontology multi-level association rule mining in the Gene Ontology.

Manda P, Ozkan S, Wang H, McCarthy F, Bridges SM.

PLoS One. 2012;7(10):e47411. doi: 10.1371/journal.pone.0047411. Epub 2012 Oct 12.

8.

Automated recognition of malignancy mentions in biomedical literature.

Jin Y, McDonald RT, Lerman K, Mandel MA, Carroll S, Liberman MY, Pereira FC, Winters RS, White PS.

BMC Bioinformatics. 2006 Nov 7;7:492.

9.

Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature.

Ravikumar KE, Wagholikar KB, Li D, Kocher JP, Liu H.

BMC Bioinformatics. 2015 Jun 6;16:185. doi: 10.1186/s12859-015-0609-x. Erratum in: BMC Bioinformatics. 2016;17(1):162.

10.

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.

Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW.

BMC Bioinformatics. 2009 Jul 21;10:228. doi: 10.1186/1471-2105-10-228.

11.

Comparative experiments on learning information extractors for proteins and their interactions.

Bunescu R, Ge R, Kate RJ, Marcotte EM, Mooney RJ, Ramani AK, Wong YW.

Artif Intell Med. 2005 Feb;33(2):139-55.

PMID:
15811782
12.

GeneTopics--interpretation of gene sets via literature-driven topic models.

Wang V, Xi L, Enayetallah A, Fauman E, Ziemek D.

BMC Syst Biol. 2013;7 Suppl 5:S10. doi: 10.1186/1752-0509-7-S5-S10. Epub 2013 Dec 9.

13.

Text mining for traditional Chinese medical knowledge discovery: a survey.

Zhou X, Peng Y, Liu B.

J Biomed Inform. 2010 Aug;43(4):650-60. doi: 10.1016/j.jbi.2010.01.002. Epub 2010 Jan 13.

14.
15.

PPIExtractor: a protein interaction extraction and visualization system for biomedical literature.

Yang Z, Zhao Z, Li Y, Hu Y, Lin H.

IEEE Trans Nanobioscience. 2013 Sep;12(3):173-81. doi: 10.1109/TNB.2013.2263837. Epub 2013 Aug 21.

PMID:
23974658
16.

Identification of temporal association rules from time-series microarray data sets.

Nam H, Lee K, Lee D.

BMC Bioinformatics. 2009 Mar 19;10 Suppl 3:S6. doi: 10.1186/1471-2105-10-S3-S6.

17.

Text mining and protein annotations: the construction and use of protein description sentences.

Krallinger M, Malik R, Valencia A.

Genome Inform. 2006;17(2):121-30.

PMID:
17503385
18.

Extracting rate changes in transcriptional regulation from MEDLINE abstracts.

Liu W, Miao K, Li G, Chang K, Zheng J, Rajapakse JC.

BMC Bioinformatics. 2014;15 Suppl 2:S4. doi: 10.1186/1471-2105-15-S2-S4. Epub 2014 Jan 24.

19.

Gene name identification and normalization using a model organism database.

Morgan AA, Hirschman L, Colosimo M, Yeh AS, Colombe JB.

J Biomed Inform. 2004 Dec;37(6):396-410.

20.

Combining literature text mining with microarray data: advances for system biology modeling.

Faro A, Giordano D, Spampinato C.

Brief Bioinform. 2012 Jan;13(1):61-82. doi: 10.1093/bib/bbr018. Epub 2011 Jun 15. Review.

PMID:
21677032

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