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Items: 1 to 20 of 102

1.

FISH using a gag-like fragment probe reveals a common Ty3-gypsy-like retrotransposon in genome of Coffea species.

Yuyama PM, Pereira LF, dos Santos TB, Sera T, Vilas-Boas LA, Lopes FR, Carareto CM, Vanzela AL.

Genome. 2012 Dec;55(12):825-33. doi: 10.1139/gen-2012-0081.

PMID:
23231601
2.

Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea).

Yu Q, Guyot R, de Kochko A, Byers A, Navajas-Pérez R, Langston BJ, Dubreuil-Tranchant C, Paterson AH, Poncet V, Nagai C, Ming R.

Plant J. 2011 Jul;67(2):305-17. doi: 10.1111/j.1365-313X.2011.04590.x.

4.

An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora.

Mondego JM, Vidal RO, Carazzolle MF, Tokuda EK, Parizzi LP, Costa GG, Pereira LF, Andrade AC, Colombo CA, Vieira LG, Pereira GA; Brazilian Coffee Genome Project Consortium..

BMC Plant Biol. 2011 Feb 8;11:30. doi: 10.1186/1471-2229-11-30.

5.

Comparison of the Coffea canephora and C. arabica karyotype based on chromosomal DNA content.

Clarindo WR, Carvalho CR.

Plant Cell Rep. 2009 Jan;28(1):73-81. doi: 10.1007/s00299-008-0621-y.

PMID:
18841372
6.

Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses.

Santos FC, Guyot R, do Valle CB, Chiari L, Techio VH, Heslop-Harrison P, Vanzela AL.

Chromosome Res. 2015 Sep;23(3):571-82. doi: 10.1007/s10577-015-9492-6.

PMID:
26386563
7.

Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments.

Cenci A, Combes MC, Lashermes P.

Plant Mol Biol. 2012 Jan;78(1-2):135-45. doi: 10.1007/s11103-011-9852-3.

PMID:
22086332
8.

AFLP and SSR polymorphism in a Coffea interspecific backcross progeny [( C. heterocalyx x C. canephora) x C. canephora].

Coulibaly I, Revol B, Noirot M, Poncet V, Lorieux M, Carasco-Lacombe C, Minier J, Dufour M, Hamon P.

Theor Appl Genet. 2003 Oct;107(6):1148-55.

PMID:
12879256
9.

The impact of Ty3-gypsy group LTR retrotransposons Fatima on B-genome specificity of polyploid wheats.

Salina EA, Sergeeva EM, Adonina IG, Shcherban AB, Belcram H, Huneau C, Chalhoub B.

BMC Plant Biol. 2011 Jun 3;11:99. doi: 10.1186/1471-2229-11-99.

10.

Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories.

Guyot R, Darré T, Dupeyron M, de Kochko A, Hamon S, Couturon E, Crouzillat D, Rigoreau M, Rakotomalala JJ, Raharimalala NE, Akaffou SD, Hamon P.

Mol Genet Genomics. 2016 Oct;291(5):1979-90. doi: 10.1007/s00438-016-1235-7.

PMID:
27469896
11.

Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes.

Guyot R, de la Mare M, Viader V, Hamon P, Coriton O, Bustamante-Porras J, Poncet V, Campa C, Hamon S, de Kochko A.

BMC Plant Biol. 2009 Feb 25;9:22. doi: 10.1186/1471-2229-9-22.

12.

RBCS1 expression in coffee: Coffea orthologs, Coffea arabica homeologs, and expression variability between genotypes and under drought stress.

Marraccini P, Freire LP, Alves GS, Vieira NG, Vinecky F, Elbelt S, Ramos HJ, Montagnon C, Vieira LG, Leroy T, Pot D, Silva VA, Rodrigues GC, Andrade AC.

BMC Plant Biol. 2011 May 16;11:85. doi: 10.1186/1471-2229-11-85.

13.

Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits.

Yuyama PM, Reis Júnior O, Ivamoto ST, Domingues DS, Carazzolle MF, Pereira GA, Charmetant P, Leroy T, Pereira LF.

Mol Genet Genomics. 2016 Feb;291(1):323-36. doi: 10.1007/s00438-015-1111-x.

PMID:
26334613
14.

Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae).

Hamon P, Duroy PO, Dubreuil-Tranchant C, Mafra D'Almeida Costa P, Duret C, Razafinarivo NJ, Couturon E, Hamon S, de Kochko A, Poncet V, Guyot R.

Mol Genet Genomics. 2011 Jun;285(6):447-60. doi: 10.1007/s00438-011-0617-0.

PMID:
21505885
15.

Factors influencing gene introgression into the allotetraploid Coffea arabica L. from its diploid relatives.

Herrera JC, Combes MC, Cortina H, Lashermes P.

Genome. 2004 Dec;47(6):1053-60.

PMID:
15644963
16.
17.

Molecular characterisation and origin of the Coffea arabica L. genome.

Lashermes P, Combes MC, Robert J, Trouslot P, D'Hont A, Anthony F, Charrier A.

Mol Gen Genet. 1999 Mar;261(2):259-66.

PMID:
10102360
18.

[Chromosomal organization of centromeric Ty3/gypsy retrotransposons in Allium cepa L. and Allium fistulosum L].

Kiseleva AV, Kirov IV, Khrustaleva LI.

Genetika. 2014 Jun;50(6):670-6. Russian.

PMID:
25715457
19.

Characterization of Ty3-gypsy-like elements in Hibiscus syriacus.

Jeung JU, Cho SK, Lee SJ, Shin JS.

Mol Cells. 2005 Jun 30;19(3):318-27.

20.

[The impact of Ty3-gypsy group retrotransposon Lila on D-genome specificity of wheat Triticum aestivum L].

Shcherban' AB, Adonina IG, Salina EA.

Mol Biol (Mosk). 2012 Jul-Aug;46(4):584-93. Russian.

PMID:
23113346
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