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Items: 1 to 20 of 136

1.

Impact of mutations on the allosteric conformational equilibrium.

Weinkam P, Chen YC, Pons J, Sali A.

J Mol Biol. 2013 Feb 8;425(3):647-61. doi: 10.1016/j.jmb.2012.11.041. Epub 2012 Dec 7.

2.

Structure-based model of allostery predicts coupling between distant sites.

Weinkam P, Pons J, Sali A.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4875-80. doi: 10.1073/pnas.1116274109. Epub 2012 Mar 8.

3.

Protein Allostery and Conformational Dynamics.

Guo J, Zhou HX.

Chem Rev. 2016 Jun 8;116(11):6503-15. doi: 10.1021/acs.chemrev.5b00590. Epub 2016 Feb 15. Review.

4.

Computation of conformational coupling in allosteric proteins.

Kidd BA, Baker D, Thomas WE.

PLoS Comput Biol. 2009 Aug;5(8):e1000484. doi: 10.1371/journal.pcbi.1000484. Epub 2009 Aug 28.

5.

Coherent conformational degrees of freedom as a structural basis for allosteric communication.

Mitternacht S, Berezovsky IN.

PLoS Comput Biol. 2011 Dec;7(12):e1002301. doi: 10.1371/journal.pcbi.1002301. Epub 2011 Dec 8.

6.

Structure-based predictive models for allosteric hot spots.

Demerdash ON, Daily MD, Mitchell JC.

PLoS Comput Biol. 2009 Oct;5(10):e1000531. doi: 10.1371/journal.pcbi.1000531. Epub 2009 Oct 9.

7.

Allosteric coupling and conformational fluctuations in proteins.

Onaran HO, Costa T.

Curr Protein Pept Sci. 2009 Apr;10(2):110-5.

PMID:
19355978
8.

What Mutagenesis Can and Cannot Reveal About Allostery.

Carlson GM, Fenton AW.

Biophys J. 2016 May 10;110(9):1912-23. doi: 10.1016/j.bpj.2016.03.021. Review.

9.

Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.

Kalescky R, Zhou H, Liu J, Tao P.

PLoS Comput Biol. 2016 Apr 26;12(4):e1004893. doi: 10.1371/journal.pcbi.1004893. eCollection 2016 Apr.

10.

Mapping polymerization and allostery of hemoglobin S using point mutations.

Weinkam P, Sali A.

J Phys Chem B. 2013 Oct 24;117(42):13058-68. doi: 10.1021/jp4025156. Epub 2013 Sep 9.

11.

Is allostery an intrinsic property of all dynamic proteins?

Gunasekaran K, Ma B, Nussinov R.

Proteins. 2004 Nov 15;57(3):433-43. Review.

PMID:
15382234
12.

A self-consistent structural perturbation approach for determining the magnitude and extent of allosteric coupling in proteins.

Rajasekaran N, Naganathan AN.

Biochem J. 2017 Jul 6;474(14):2379-2388. doi: 10.1042/BCJ20170304.

PMID:
28522638
13.

Coarse-grained molecular simulations of allosteric cooperativity.

Nandigrami P, Portman JJ.

J Chem Phys. 2016 Mar 14;144(10):105101. doi: 10.1063/1.4943043.

PMID:
26979705
14.

SPACER: Server for predicting allosteric communication and effects of regulation.

Goncearenco A, Mitternacht S, Yong T, Eisenhaber B, Eisenhaber F, Berezovsky IN.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W266-72. doi: 10.1093/nar/gkt460. Epub 2013 Jun 3.

15.

Binding leverage as a molecular basis for allosteric regulation.

Mitternacht S, Berezovsky IN.

PLoS Comput Biol. 2011 Sep;7(9):e1002148. doi: 10.1371/journal.pcbi.1002148. Epub 2011 Sep 15.

16.

Exploiting protein flexibility to predict the location of allosteric sites.

Panjkovich A, Daura X.

BMC Bioinformatics. 2012 Oct 25;13:273. doi: 10.1186/1471-2105-13-273.

17.

Allostery and population shift in drug discovery.

Kar G, Keskin O, Gursoy A, Nussinov R.

Curr Opin Pharmacol. 2010 Dec;10(6):715-22. doi: 10.1016/j.coph.2010.09.002. Epub 2010 Sep 29. Review.

PMID:
20884293
18.

The energy landscape analysis of cancer mutations in protein kinases.

Dixit A, Verkhivker GM.

PLoS One. 2011;6(10):e26071. doi: 10.1371/journal.pone.0026071. Epub 2011 Oct 6.

19.

Allosteric coupling via distant disorder-to-order transitions.

Eginton C, Cressman WJ, Bachas S, Wade H, Beckett D.

J Mol Biol. 2015 Apr 24;427(8):1695-704. doi: 10.1016/j.jmb.2015.02.021. Epub 2015 Mar 4.

PMID:
25746672
20.

Allostery in protein domains reflects a balance of steric and hydrophobic effects.

England JL.

Structure. 2011 Jul 13;19(7):967-75. doi: 10.1016/j.str.2011.04.009.

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