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Items: 1 to 20 of 78

1.

RNA deep sequencing as a tool for selection of cell lines for systematic subcellular localization of all human proteins.

Danielsson F, Wiking M, Mahdessian D, Skogs M, Ait Blal H, Hjelmare M, Stadler C, Uhlén M, Lundberg E.

J Proteome Res. 2013 Jan 4;12(1):299-307. doi: 10.1021/pr3009308. Epub 2012 Dec 20.

PMID:
23227862
2.

Antibody-based protein profiling of the human chromosome 21.

Uhlén M, Oksvold P, Älgenäs C, Hamsten C, Fagerberg L, Klevebring D, Lundberg E, Odeberg J, Pontén F, Kondo T, Sivertsson Å.

Mol Cell Proteomics. 2012 Mar;11(3):M111.013458. doi: 10.1074/mcp.M111.013458. Epub 2011 Oct 31.

3.

Contribution of antibody-based protein profiling to the human Chromosome-centric Proteome Project (C-HPP).

Fagerberg L, Oksvold P, Skogs M, Algenäs C, Lundberg E, Pontén F, Sivertsson A, Odeberg J, Klevebring D, Kampf C, Asplund A, Sjöstedt E, Al-Khalili Szigyarto C, Edqvist PH, Olsson I, Rydberg U, Hudson P, Ottosson Takanen J, Berling H, Björling L, Tegel H, Rockberg J, Nilsson P, Navani S, Jirström K, Mulder J, Schwenk JM, Zwahlen M, Hober S, Forsberg M, von Feilitzen K, Uhlén M.

J Proteome Res. 2013 Jun 7;12(6):2439-48. doi: 10.1021/pr300924j. Epub 2012 Dec 31.

PMID:
23276153
4.

Defining the transcriptome and proteome in three functionally different human cell lines.

Lundberg E, Fagerberg L, Klevebring D, Matic I, Geiger T, Cox J, Algenäs C, Lundeberg J, Mann M, Uhlen M.

Mol Syst Biol. 2010 Dec 21;6:450. doi: 10.1038/msb.2010.106.

5.

RNA- and antibody-based profiling of the human proteome with focus on chromosome 19.

Stadler C, Fagerberg L, Sivertsson Å, Oksvold P, Zwahlen M, Hallström BM, Lundberg E, Uhlén M.

J Proteome Res. 2014 Apr 4;13(4):2019-27. doi: 10.1021/pr401156g. Epub 2014 Mar 12.

PMID:
24579871
6.

The human liver-specific proteome defined by transcriptomics and antibody-based profiling.

Kampf C, Mardinoglu A, Fagerberg L, Hallström BM, Edlund K, Lundberg E, Pontén F, Nielsen J, Uhlen M.

FASEB J. 2014 Jul;28(7):2901-14. doi: 10.1096/fj.14-250555. Epub 2014 Mar 19.

7.

neXtProt: organizing protein knowledge in the context of human proteome projects.

Gaudet P, Argoud-Puy G, Cusin I, Duek P, Evalet O, Gateau A, Gleizes A, Pereira M, Zahn-Zabal M, Zwahlen C, Bairoch A, Lane L.

J Proteome Res. 2013 Jan 4;12(1):293-8. doi: 10.1021/pr300830v. Epub 2012 Dec 3.

PMID:
23205526
8.

Proteome research: complementarity and limitations with respect to the RNA and DNA worlds.

Humphery-Smith I, Cordwell SJ, Blackstock WP.

Electrophoresis. 1997 Aug;18(8):1217-42. Review.

PMID:
9298643
9.

A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17.

Liu S, Im H, Bairoch A, Cristofanilli M, Chen R, Deutsch EW, Dalton S, Fenyo D, Fanayan S, Gates C, Gaudet P, Hincapie M, Hanash S, Kim H, Jeong SK, Lundberg E, Mias G, Menon R, Mu Z, Nice E, Paik YK, Uhlen M, Wells L, Wu SL, Yan F, Zhang F, Zhang Y, Snyder M, Omenn GS, Beavis RC, Hancock WS.

J Proteome Res. 2013 Jan 4;12(1):45-57. doi: 10.1021/pr300985j. Epub 2012 Dec 21.

10.

Toward a confocal subcellular atlas of the human proteome.

Barbe L, Lundberg E, Oksvold P, Stenius A, Lewin E, Björling E, Asplund A, Pontén F, Brismar H, Uhlén M, Andersson-Svahn H.

Mol Cell Proteomics. 2008 Mar;7(3):499-508. Epub 2007 Nov 19.

11.

Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project.

Díez P, Droste C, Dégano RM, González-Muñoz M, Ibarrola N, Pérez-Andrés M, Garin-Muga A, Segura V, Marko-Varga G, LaBaer J, Orfao A, Corrales FJ, De Las Rivas J, Fuentes M.

J Proteome Res. 2015 Sep 4;14(9):3530-40. doi: 10.1021/acs.jproteome.5b00474. Epub 2015 Aug 5.

PMID:
26216070
12.

Spanish human proteome project: dissection of chromosome 16.

Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ.

J Proteome Res. 2013 Jan 4;12(1):112-22. doi: 10.1021/pr300898u. Epub 2012 Dec 12.

PMID:
23234512
13.

Approaching marine bioprospecting in hexacorals by RNA deep sequencing.

Johansen SD, Emblem A, Karlsen BO, Okkenhaug S, Hansen H, Moum T, Coucheron DH, Seternes OM.

N Biotechnol. 2010 Jul 31;27(3):267-75. doi: 10.1016/j.nbt.2010.02.019. Epub 2010 Feb 26.

PMID:
20219706
14.

Qualitative and quantitative expression status of the human chromosome 20 genes in cancer tissues and the representative cell lines.

Wang Q, Wen B, Yan G, Wei J, Xie L, Xu S, Jiang D, Wang T, Lin L, Zi J, Zhang J, Zhou R, Zhao H, Ren Z, Qu N, Lou X, Sun H, Du C, Chen C, Zhang S, Tan F, Xian Y, Gao Z, He M, Chen L, Zhao X, Xu P, Zhu Y, Yin X, Shen H, Zhang Y, Jiang J, Zhang C, Li L, Chang C, Ma J, Yan G, Yao J, Lu H, Ying W, Zhong F, He QY, Liu S.

J Proteome Res. 2013 Jan 4;12(1):151-61. doi: 10.1021/pr3008336. Epub 2012 Dec 19.

PMID:
23252959
15.

Integrated view of the human chromosome X-centric proteome project.

Yamamoto T, Nakayama K, Hirano H, Tomonaga T, Ishihama Y, Yamada T, Kondo T, Kodera Y, Sato Y, Araki N, Mamitsuka H, Goshima N.

J Proteome Res. 2013 Jan 4;12(1):58-61. doi: 10.1021/pr300844p. Epub 2012 Dec 21.

PMID:
23259409
16.

Affinity proteomics for systematic protein profiling of chromosome 21 gene products in human tissues.

Agaton C, Galli J, Höidén Guthenberg I, Janzon L, Hansson M, Asplund A, Brundell E, Lindberg S, Ruthberg I, Wester K, Wurtz D, Höög C, Lundeberg J, Ståhl S, Pontén F, Uhlén M.

Mol Cell Proteomics. 2003 Jun;2(6):405-14. Epub 2003 Jun 9.

17.

Defining the human gallbladder proteome by transcriptomics and affinity proteomics.

Kampf C, Mardinoglu A, Fagerberg L, Hallström BM, Danielsson A, Nielsen J, Pontén F, Uhlen M.

Proteomics. 2014 Nov;14(21-22):2498-507. doi: 10.1002/pmic.201400201. Epub 2014 Oct 9.

PMID:
25175928
18.

Full-length transcriptome-based H-InvDB throws a new light on chromosome-centric proteomics.

Imanishi T, Nagai Y, Habara T, Yamasaki C, Takeda J, Mikami S, Bando Y, Tojo H, Nishimura T.

J Proteome Res. 2013 Jan 4;12(1):62-6. doi: 10.1021/pr300861a. Epub 2012 Dec 17.

PMID:
23245335
19.

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.

Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G.

BMC Genomics. 2009 Apr 20;10:163. doi: 10.1186/1471-2164-10-163.

20.

Transcriptomics using next generation sequencing technologies.

Lee-Liu D, Almonacid LI, Faunes F, Melo F, Larrain J.

Methods Mol Biol. 2012;917:293-317. doi: 10.1007/978-1-61779-992-1_18.

PMID:
22956096

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