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Items: 1 to 20 of 98

1.

Efficient depletion of host DNA contamination in malaria clinical sequencing.

Oyola SO, Gu Y, Manske M, Otto TD, O'Brien J, Alcock D, Macinnis B, Berriman M, Newbold CI, Kwiatkowski DP, Swerdlow HP, Quail MA.

J Clin Microbiol. 2013 Mar;51(3):745-51. doi: 10.1128/JCM.02507-12. Epub 2012 Dec 5.

2.

Isolation of Plasmodium falciparum by flow-cytometry: implications for single-trophozoite genotyping and parasite DNA purification for whole-genome high-throughput sequencing of archival samples.

Boissière A, Arnathau C, Duperray C, Berry L, Lachaud L, Renaud F, Durand P, Prugnolle F.

Malar J. 2012 May 14;11:163. doi: 10.1186/1475-2875-11-163.

3.

Rapid diagnostic tests for molecular surveillance of Plasmodium falciparum malaria -assessment of DNA extraction methods and field applicability.

Morris U, Aydin-Schmidt B, Shakely D, Mårtensson A, Jörnhagen L, Ali AS, Msellem MI, Petzold M, Gil JP, Ferreira PE, Björkman A.

Malar J. 2013 Mar 19;12:106. doi: 10.1186/1475-2875-12-106.

4.

Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparum-infected whole blood samples.

Venkatesan M, Amaratunga C, Campino S, Auburn S, Koch O, Lim P, Uk S, Socheat D, Kwiatkowski DP, Fairhurst RM, Plowe CV.

Malar J. 2012 Feb 10;11:41. doi: 10.1186/1475-2875-11-41.

5.

Pre-amplification methods for tracking low-grade Plasmodium falciparum populations during scaled-up interventions in Southern Zambia.

Mharakurwa S, Daniels R, Scott A, Wirth DF, Thuma P, Volkman SK.

Malar J. 2014 Mar 12;13:89. doi: 10.1186/1475-2875-13-89.

6.

An effective method to purify Plasmodium falciparum DNA directly from clinical blood samples for whole genome high-throughput sequencing.

Auburn S, Campino S, Clark TG, Djimde AA, Zongo I, Pinches R, Manske M, Mangano V, Alcock D, Anastasi E, Maslen G, Macinnis B, Rockett K, Modiano D, Newbold CI, Doumbo OK, Ouédraogo JB, Kwiatkowski DP.

PLoS One. 2011;6(7):e22213. doi: 10.1371/journal.pone.0022213. Epub 2011 Jul 18.

7.

Hybrid selection for sequencing pathogen genomes from clinical samples.

Melnikov A, Galinsky K, Rogov P, Fennell T, Van Tyne D, Russ C, Daniels R, Barnes KG, Bochicchio J, Ndiaye D, Sene PD, Wirth DF, Nusbaum C, Volkman SK, Birren BW, Gnirke A, Neafsey DE.

Genome Biol. 2011 Aug 11;12(8):R73. doi: 10.1186/gb-2011-12-8-r73.

8.

PCR for low-level detection of malaria parasites in blood.

Tirasophon W, Panyim S.

Methods Mol Biol. 1993;21:205-11. No abstract available.

PMID:
8220716
9.

Rapid DNA extraction for molecular epidemiological studies of malaria.

Henning L, Felger I, Beck HP.

Acta Trop. 1999 Mar 15;72(2):149-55.

PMID:
10206115
10.

A microarray platform and novel SNP calling algorithm to evaluate Plasmodium falciparum field samples of low DNA quantity.

Jacob CG, Tan JC, Miller BA, Tan A, Takala-Harrison S, Ferdig MT, Plowe CV.

BMC Genomics. 2014 Aug 26;15:719. doi: 10.1186/1471-2164-15-719.

11.

Rapid and simple method for isolating malaria DNA from fingerprick samples of blood.

Foley M, Ranford-Cartwright LC, Babiker HA.

Mol Biochem Parasitol. 1992 Jul;53(1-2):241-4. No abstract available.

PMID:
1501643
12.

Cytochrome b gene quantitative PCR for diagnosing Plasmodium falciparum infection in travelers.

Farrugia C, Cabaret O, Botterel F, Bories C, Foulet F, Costa JM, Bretagne S.

J Clin Microbiol. 2011 Jun;49(6):2191-5. doi: 10.1128/JCM.02156-10. Epub 2011 Apr 20.

13.

Detecting mutations in PfCRT and PfMDR1 genes among Plasmodium falciparum isolates from Saudi Arabia by pyrosequencing.

Bin Dajem SM, Al-Sheikh AA, Bohol MF, Alhawi M, Al-Ahdal MN, Al-Qahtani A.

Parasitol Res. 2011 Aug;109(2):291-6. doi: 10.1007/s00436-011-2251-5. Epub 2011 Feb 25.

PMID:
21350795
14.

Pooled deep sequencing of Plasmodium falciparum isolates: an efficient and scalable tool to quantify prevailing malaria drug-resistance genotypes.

Taylor SM, Parobek CM, Aragam N, Ngasala BE, Mårtensson A, Meshnick SR, Juliano JJ.

J Infect Dis. 2013 Dec 15;208(12):1998-2006. doi: 10.1093/infdis/jit392. Epub 2013 Aug 1.

15.

Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples.

Cowell AN, Loy DE, Sundararaman SA, Valdivia H, Fisch K, Lescano AG, Baldeviano GC, Durand S, Gerbasi V, Sutherland CJ, Nolder D, Vinetz JM, Hahn BH, Winzeler EA.

MBio. 2017 Feb 7;8(1). pii: e02257-16. doi: 10.1128/mBio.02257-16.

16.

[In vitro cultivation of fields isolates of Plasmodium falciparum in Mali].

Djimde AA, Kirkman L, Kassambara L, Diallo M, Plowe CV, Wellems TE, Doumbo OK.

Bull Soc Pathol Exot. 2007 Feb;100(1):3-5. French.

PMID:
17402683
17.

Detectability of Plasmodium falciparum clones.

Bretscher MT, Valsangiacomo F, Owusu-Agyei S, Penny MA, Felger I, Smith T.

Malar J. 2010 Aug 18;9:234. doi: 10.1186/1475-2875-9-234.

18.

Population genetic analysis of Plasmodium falciparum parasites using a customized Illumina GoldenGate genotyping assay.

Campino S, Auburn S, Kivinen K, Zongo I, Ouedraogo JB, Mangano V, Djimde A, Doumbo OK, Kiara SM, Nzila A, Borrmann S, Marsh K, Michon P, Mueller I, Siba P, Jiang H, Su XZ, Amaratunga C, Socheat D, Fairhurst RM, Imwong M, Anderson T, Nosten F, White NJ, Gwilliam R, Deloukas P, MacInnis B, Newbold CI, Rockett K, Clark TG, Kwiatkowski DP.

PLoS One. 2011;6(6):e20251. doi: 10.1371/journal.pone.0020251. Epub 2011 Jun 6.

19.

Typing Plasmodium yoelii microsatellites using a simple and affordable fluorescent labeling method.

Li J, Zhang Y, Sullivan M, Hong L, Huang L, Lu F, McCutchan TF, Su XZ.

Mol Biochem Parasitol. 2007 Oct;155(2):94-102. Epub 2007 Jun 17.

20.

Imported malaria in United Arab Emirates: evaluation of a new DNA extraction technique using nested PCR.

Sultan DM, Khalil MM, Abdouh AS, Doleh WF, Al Muthanna AA.

Korean J Parasitol. 2009 Sep;47(3):227-33. doi: 10.3347/kjp.2009.47.3.227. Epub 2009 Aug 28.

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