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Items: 1 to 20 of 105

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1.

D²P²: database of disordered protein predictions.

Oates ME, Romero P, Ishida T, Ghalwash M, Mizianty MJ, Xue B, Dosztányi Z, Uversky VN, Obradovic Z, Kurgan L, Dunker AK, Gough J.

Nucleic Acids Res. 2013 Jan;41(Database issue):D508-16. doi: 10.1093/nar/gks1226. Epub 2012 Nov 29.

2.

MobiDB: a comprehensive database of intrinsic protein disorder annotations.

Di Domenico T, Walsh I, Martin AJ, Tosatto SC.

Bioinformatics. 2012 Aug 1;28(15):2080-1. doi: 10.1093/bioinformatics/bts327. Epub 2012 Jun 1.

PMID:
22661649
3.

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins.

Potenza E, Di Domenico T, Walsh I, Tosatto SC.

Nucleic Acids Res. 2015 Jan;43(Database issue):D315-20. doi: 10.1093/nar/gku982. Epub 2014 Oct 31.

5.

Intrinsic disorder in the Protein Data Bank.

Le Gall T, Romero PR, Cortese MS, Uversky VN, Dunker AK.

J Biomol Struct Dyn. 2007 Feb;24(4):325-42.

PMID:
17206849
6.

The SUPERFAMILY database in 2007: families and functions.

Wilson D, Madera M, Vogel C, Chothia C, Gough J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D308-13. Epub 2006 Nov 10.

7.

3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.

Fleming K, Müller A, MacCallum RM, Sternberg MJ.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D245-50.

8.

The SUPERFAMILY 1.75 database in 2014: a doubling of data.

Oates ME, Stahlhacke J, Vavoulis DV, Smithers B, Rackham OJ, Sardar AJ, Zaucha J, Thurlby N, Fang H, Gough J.

Nucleic Acids Res. 2015 Jan;43(Database issue):D227-33. doi: 10.1093/nar/gku1041. Epub 2014 Nov 20.

9.

The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.

Fukuchi S, Homma K, Sakamoto S, Sugawara H, Tateno Y, Gojobori T, Nishikawa K.

Nucleic Acids Res. 2009 Jan;37(Database issue):D333-7. doi: 10.1093/nar/gkn855. Epub 2008 Nov 4.

10.

EVEREST: automatic identification and classification of protein domains in all protein sequences.

Portugaly E, Harel A, Linial N, Linial M.

BMC Bioinformatics. 2006 Jun 2;7:277.

11.

SCOP database in 2002: refinements accommodate structural genomics.

Lo Conte L, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.

Nucleic Acids Res. 2002 Jan 1;30(1):264-7.

12.

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.

Lewis TE, Sillitoe I, Andreeva A, Blundell TL, Buchan DW, Chothia C, Cuff A, Dana JM, Filippis I, Gough J, Hunter S, Jones DT, Kelley LA, Kleywegt GJ, Minneci F, Mitchell A, Murzin AG, Ochoa-Montaño B, Rackham OJ, Smith J, Sternberg MJ, Velankar S, Yeats C, Orengo C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D499-507. doi: 10.1093/nar/gks1266. Epub 2012 Nov 30.

13.
14.

The unfoldomics decade: an update on intrinsically disordered proteins.

Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S1. doi: 10.1186/1471-2164-9-S2-S1.

15.

Genome-scale prediction of proteins with long intrinsically disordered regions.

Peng Z, Mizianty MJ, Kurgan L.

Proteins. 2014 Jan;82(1):145-58. doi: 10.1002/prot.24348. Epub 2013 Sep 17.

PMID:
23798504
16.

Abundance of intrinsic disorder in protein associated with cardiovascular disease.

Cheng Y, LeGall T, Oldfield CJ, Dunker AK, Uversky VN.

Biochemistry. 2006 Sep 5;45(35):10448-60.

PMID:
16939197
17.

The SUPERFAMILY database in 2004: additions and improvements.

Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D235-9.

18.

ESpritz: accurate and fast prediction of protein disorder.

Walsh I, Martin AJ, Di Domenico T, Tosatto SC.

Bioinformatics. 2012 Feb 15;28(4):503-9. doi: 10.1093/bioinformatics/btr682. Epub 2011 Dec 20.

PMID:
22190692
19.

AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.

Gewehr JE, Hintermair V, Zimmer R.

Bioinformatics. 2007 May 15;23(10):1203-10. Epub 2007 Mar 22.

PMID:
17379694
20.

PrDOS: prediction of disordered protein regions from amino acid sequence.

Ishida T, Kinoshita K.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W460-4. Epub 2007 Jun 12.

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