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Items: 1 to 20 of 104

1.

miRT: a database of validated transcription start sites of human microRNAs.

Bhattacharyya M, Das M, Bandyopadhyay S.

Genomics Proteomics Bioinformatics. 2012 Oct;10(5):310-6. doi: 10.1016/j.gpb.2012.08.005.

2.

MicroRNA transcription start site prediction with multi-objective feature selection.

Bhattacharyya M, Feuerbach L, Bhadra T, Lengauer T, Bandyopadhyay S.

Stat Appl Genet Mol Biol. 2012 Jan 6;11(1):Article 6. doi: 10.2202/1544-6115.1743.

PMID:
22499686
3.

Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data.

Chien CH, Sun YM, Chang WC, Chiang-Hsieh PY, Lee TY, Tsai WC, Horng JT, Tsou AP, Huang HD.

Nucleic Acids Res. 2011 Nov;39(21):9345-56. doi: 10.1093/nar/gkr604.

4.
5.

Evidence for post-transcriptional regulation of clustered microRNAs in Drosophila.

Ryazansky SS, Gvozdev VA, Berezikov E.

BMC Genomics. 2011 Jul 19;12:371. doi: 10.1186/1471-2164-12-371.

6.

miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes.

Dweep H, Sticht C, Pandey P, Gretz N.

J Biomed Inform. 2011 Oct;44(5):839-47. doi: 10.1016/j.jbi.2011.05.002.

7.

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators.

Georgakilas G, Vlachos IS, Zagganas K, Vergoulis T, Paraskevopoulou MD, Kanellos I, Tsanakas P, Dellis D, Fevgas A, Dalamagas T, Hatzigeorgiou AG.

Nucleic Acids Res. 2016 Jan 4;44(D1):D190-5. doi: 10.1093/nar/gkv1254.

8.

miRNA_Targets: a database for miRNA target predictions in coding and non-coding regions of mRNAs.

Kumar A, Wong AK, Tizard ML, Moore RJ, Lefèvre C.

Genomics. 2012 Dec;100(6):352-6. doi: 10.1016/j.ygeno.2012.08.006.

9.

miRGate: a curated database of human, mouse and rat miRNA-mRNA targets.

Andrés-León E, González Peña D, Gómez-López G, Pisano DG.

Database (Oxford). 2015 Apr 8;2015:bav035. doi: 10.1093/database/bav035.

10.

AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs.

Chien CH, Chiang-Hsieh YF, Chen YA, Chow CN, Wu NY, Hou PF, Chang WC.

Database (Oxford). 2015 May 13;2015:bav042. doi: 10.1093/database/bav042.

11.

microPIR: an integrated database of microRNA target sites within human promoter sequences.

Piriyapongsa J, Bootchai C, Ngamphiw C, Tongsima S.

PLoS One. 2012;7(3):e33888. doi: 10.1371/journal.pone.0033888.

12.
13.

Fast and effective prediction of microRNA/target duplexes.

Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R.

RNA. 2004 Oct;10(10):1507-17.

14.

Genomic analysis of silkworm microRNA promoters and clusters.

Huang Y, Shen XJ, Zou Q, Huang JS, Tang SM.

Mol Biol (Mosk). 2011 Mar-Apr;45(2):225-30.

PMID:
21630565
15.

Genomic analysis of rice microRNA promoters and clusters.

Cui X, Xu SM, Mu DS, Yang ZM.

Gene. 2009 Feb 15;431(1-2):61-6. doi: 10.1016/j.gene.2008.11.016.

PMID:
19073239
16.

Identifying miRNAs, targets and functions.

Liu B, Li J, Cairns MJ.

Brief Bioinform. 2014 Jan;15(1):1-19. doi: 10.1093/bib/bbs075. Review.

17.

miRGen 2.0: a database of microRNA genomic information and regulation.

Alexiou P, Vergoulis T, Gleditzsch M, Prekas G, Dalamagas T, Megraw M, Grosse I, Sellis T, Hatzigeorgiou AG.

Nucleic Acids Res. 2010 Jan;38(Database issue):D137-41. doi: 10.1093/nar/gkp888.

18.

microTSS: accurate microRNA transcription start site identification reveals a significant number of divergent pri-miRNAs.

Georgakilas G, Vlachos IS, Paraskevopoulou MD, Yang P, Zhang Y, Economides AN, Hatzigeorgiou AG.

Nat Commun. 2014 Dec 10;5:5700. doi: 10.1038/ncomms6700.

PMID:
25492647
19.

An unsolved mystery: the target-recognizing RNA species of microRNA genes.

Chen CZ.

Biochimie. 2013 Sep;95(9):1663-76. doi: 10.1016/j.biochi.2013.05.002. Review.

20.

MicroRNA binding sites in C. elegans 3' UTRs.

Liu C, Rennie WA, Mallick B, Kanoria S, Long D, Wolenc A, Carmack CS, Ding Y.

RNA Biol. 2014;11(6):693-701.

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