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Items: 1 to 20 of 114

1.

Tips and tricks for the assembly of a Corynebacterium pseudotuberculosis genome using a semiconductor sequencer.

Ramos RT, Carneiro AR, Soares Sde C, dos Santos AR, Almeida S, Guimarães L, Figueira F, Barbosa E, Tauch A, Azevedo V, Silva A.

Microb Biotechnol. 2013 Mar;6(2):150-6. doi: 10.1111/1751-7915.12006. Epub 2012 Dec 2.

2.

Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse.

Ramos RT, Silva A, Carneiro AR, Pinto AC, Soares Sde C, Santos AR, Almeida SS, Guimarães LC, Aburjaile FF, Barbosa EG, Dorella FA, Rocha FS, Cerdeira LT, Barbosa MS, Tauch A, Edman J, Spier S, Miyoshi A, Schneider MP, Azevedo V.

J Bacteriol. 2012 Dec;194(23):6620-1. doi: 10.1128/JB.01616-12.

3.

Assessing the Genotypic Differences between Strains of Corynebacterium pseudotuberculosis biovar equi through Comparative Genomics.

Baraúna RA, Ramos RT, Veras AA, Pinheiro KC, Benevides LJ, Viana MV, Guimarães LC, Edman JM, Spier SJ, Azevedo V, Silva A.

PLoS One. 2017 Jan 26;12(1):e0170676. doi: 10.1371/journal.pone.0170676. eCollection 2017.

4.

Complete genome sequence of Corynebacterium pseudotuberculosis strain CIP 52.97, isolated from a horse in Kenya.

Cerdeira LT, Schneider MP, Pinto AC, de Almeida SS, dos Santos AR, Barbosa EG, Ali A, Aburjaile FF, de Abreu VA, Guimarães LC, Soares Sde C, Dorella FA, Rocha FS, Bol E, Gomes de Sá PH, Lopes TS, Barbosa MS, Carneiro AR, Jucá Ramos RT, Coimbra NA, Lima AR, Barh D, Jain N, Tiwari S, Raja R, Zambare V, Ghosh P, Trost E, Tauch A, Miyoshi A, Azevedo V, Silva A.

J Bacteriol. 2011 Dec;193(24):7025-6. doi: 10.1128/JB.06293-11.

5.

Complete genome sequence of Corynebacterium pseudotuberculosis strain 1/06-A, isolated from a horse in North America.

Pethick FE, Lainson AF, Yaga R, Flockhart A, Smith DG, Donachie W, Cerdeira LT, Silva A, Bol E, Lopes TS, Barbosa MS, Pinto AC, Dos Santos AR, Soares SC, Almeida SS, Guimaraes LC, Aburjaile FF, Abreu VA, Ribeiro D, Fiaux KK, Diniz CA, Barbosa EG, Pereira UP, Hassan SS, Ali A, Bakhtiar SM, Dorella FA, Carneiro AR, Ramos RT, Rocha FS, Schneider MP, Miyoshi A, Azevedo V, Fontaine MC.

J Bacteriol. 2012 Aug;194(16):4476. doi: 10.1128/JB.00922-12.

6.

High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly.

Ramos RT, Carneiro AR, de Castro Soares S, Barbosa S, Varuzza L, Orabona G, Tauch A, Azevedo V, Schneider MP, Silva A.

J Microbiol Methods. 2013 Dec;95(3):441-7. doi: 10.1016/j.mimet.2013.06.006. Epub 2013 Jun 21.

PMID:
23792707
7.

Complete genome sequence of Corynebacterium pseudotuberculosis strain Cp267, isolated from a llama.

Lopes T, Silva A, Thiago R, Carneiro A, Dorella FA, Rocha FS, dos Santos AR, Lima AR, Guimarães LC, Barbosa EG, Ribeiro D, Fiaux KK, Diniz CA, de Abreu VA, de Almeida SS, Hassan SS, Ali A, Bakhtiar SM, Aburjaile FF, Pinto AC, Soares Sde C, Pereira Ude P, Schneider MP, Miyoshi A, Edman J, Spier S, Azevedo V.

J Bacteriol. 2012 Jul;194(13):3567-8. doi: 10.1128/JB.00461-12.

8.

Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.

Cerdeira LT, Carneiro AR, Ramos RT, de Almeida SS, D'Afonseca V, Schneider MP, Baumbach J, Tauch A, McCulloch JA, Azevedo VA, Silva A.

J Microbiol Methods. 2011 Aug;86(2):218-23. doi: 10.1016/j.mimet.2011.05.008. Epub 2011 May 18.

9.

Molecular epidemiology of Corynebacterium pseudotuberculosis isolated from horses in California.

Haas DJ, Dorneles EM, Spier SJ, Carroll SP, Edman J, Azevedo VA, Heinemann MB, Lage AP.

Infect Genet Evol. 2017 Apr;49:186-194. doi: 10.1016/j.meegid.2016.12.011. Epub 2016 Dec 13.

PMID:
27979735
10.

Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production.

Soares SC, Trost E, Ramos RT, Carneiro AR, Santos AR, Pinto AC, Barbosa E, Aburjaile F, Ali A, Diniz CA, Hassan SS, Fiaux K, Guimarães LC, Bakhtiar SM, Pereira U, Almeida SS, Abreu VA, Rocha FS, Dorella FA, Miyoshi A, Silva A, Azevedo V, Tauch A.

J Biotechnol. 2013 Aug 20;167(2):135-41. doi: 10.1016/j.jbiotec.2012.11.003. Epub 2012 Nov 29.

PMID:
23201561
11.

Host associated polymorphisms in the Corynebacterium pseudotuberculosis rpoB gene sequence.

Retamal P, Ríos M, Cheuquepán F, Abalos P, Pizarro-Lucero J, Borie C, Gutierrez J.

Vet Microbiol. 2011 Aug 5;151(3-4):400-3. doi: 10.1016/j.vetmic.2011.03.012. Epub 2011 Mar 21.

PMID:
21482046
12.

An integrated structural proteomics approach along the druggable genome of Corynebacterium pseudotuberculosis species for putative druggable targets.

Radusky LG, Hassan S, Lanzarotti E, Tiwari S, Jamal S, Ali J, Ali A, Ferreira R, Barh D, Silva A, Turjanski AG, Azevedo VA.

BMC Genomics. 2015;16 Suppl 5:S9. doi: 10.1186/1471-2164-16-S5-S9. Epub 2015 May 26.

13.

Ion Torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method.

Castro TL, Seyffert N, Ramos RT, Barbosa S, Carvalho RD, Pinto AC, Carneiro AR, Silva WM, Pacheco LG, Downson C, Schneider MP, Miyoshi A, Azevedo V, Silva A.

Microb Biotechnol. 2013 Mar;6(2):168-77. doi: 10.1111/1751-7915.12020. Epub 2013 Jan 15.

14.

Whole-genome sequence of Corynebacterium pseudotuberculosis strain Cp162, isolated from camel.

Hassan SS, Schneider MP, Ramos RT, Carneiro AR, Ranieri A, Guimarães LC, Ali A, Bakhtiar SM, Pereira Ude P, dos Santos AR, Soares Sde C, Dorella F, Pinto AC, Ribeiro D, Barbosa MS, Almeida S, Abreu V, Aburjaile F, Fiaux K, Barbosa E, Diniz C, Rocha FS, Saxena R, Tiwari S, Zambare V, Ghosh P, Pacheco LG, Dowson CG, Kumar A, Barh D, Miyoshi A, Azevedo V, Silva A.

J Bacteriol. 2012 Oct;194(20):5718-9.

15.

Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002.

Mariano DC, Sousa Tde J, Pereira FL, Aburjaile F, Barh D, Rocha F, Pinto AC, Hassan SS, Saraiva TD, Dorella FA, de Carvalho AF, Leal CA, Figueiredo HC, Silva A, Ramos RT, Azevedo VA.

BMC Genomics. 2016 Apr 30;17:315. doi: 10.1186/s12864-016-2673-7.

16.

Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in Scotland and Australia, respectively.

Pethick FE, Lainson AF, Yaga R, Flockhart A, Smith DG, Donachie W, Cerdeira LT, Silva A, Bol E, Lopes TS, Barbosa MS, Pinto AC, dos Santos AR, Soares SC, Almeida SS, Guimaraes LC, Aburjaile FF, Abreu VA, Ribeiro D, Fiaux KK, Diniz CA, Barbosa EG, Pereira UP, Hassan SS, Ali A, Bakhtiar SM, Dorella FA, Carneiro AR, Ramos RT, Rocha FS, Schneider MP, Miyoshi A, Azevedo V, Fontaine MC.

J Bacteriol. 2012 Sep;194(17):4736-7. doi: 10.1128/JB.00918-12.

17.

Quality of prokaryote genome assembly: indispensable issues of factors affecting prokaryote genome assembly quality.

Carneiro AR, Ramos RT, Barbosa HP, Schneider MP, Barh D, Azevedo V, Silva A.

Gene. 2012 Sep 1;505(2):365-7. doi: 10.1016/j.gene.2012.06.016. Epub 2012 Jun 18.

PMID:
22721771
18.

Complete genome sequence of Corynebacterium pseudotuberculosis Cp31, isolated from an Egyptian buffalo.

Silva A, Ramos RT, Ribeiro Carneiro A, Cybelle Pinto A, de Castro Soares S, Rodrigues Santos A, Silva Almeida S, Guimarães LC, Figueira Aburjaile F, Vieira Barbosa EG, Alves Dorella F, Souza Rocha F, Souza Lopes T, Kawasaki R, Gomes Sá P, da Rocha Coimbra NA, Teixeira Cerdeira L, Silvanira Barbosa M, Cruz Schneider MP, Miyoshi A, Selim SA, Moawad MS, Azevedo V.

J Bacteriol. 2012 Dec;194(23):6663-4. doi: 10.1128/JB.01782-12.

19.

Survival of Corynebacterium pseudotuberculosis biovar equi in soil.

Spier SJ, Toth B, Edman J, Quave A, Habasha F, Garrick M, Byrne BA.

Vet Rec. 2012 Feb;170(7):180. doi: 10.1136/vr.100543. Epub 2012 Jan 21. No abstract available.

PMID:
22266682
20.

Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.

Viana MVC, Figueiredo H, Ramos R, Guimarães LC, Pereira FL, Dorella FA, Selim SAK, Salaheldean M, Silva A, Wattam AR, Azevedo V.

PLoS One. 2017 Apr 26;12(4):e0176347. doi: 10.1371/journal.pone.0176347. eCollection 2017.

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