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Items: 1 to 20 of 141

1.

GenColors-based comparative genome databases for small eukaryotic genomes.

Felder M, Romualdi A, Petzold A, Platzer M, Sühnel J, Glöckner G.

Nucleic Acids Res. 2013 Jan;41(Database issue):D692-9. doi: 10.1093/nar/gks1176. Epub 2012 Nov 28.

2.

GenColors: annotation and comparative genomics of prokaryotes made easy.

Romualdi A, Felder M, Rose D, Gausmann U, Schilhabel M, Glöckner G, Platzer M, Sühnel J.

Methods Mol Biol. 2007;395:75-96.

PMID:
17993668
3.

GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.

Romualdi A, Siddiqui R, Glöckner G, Lehmann R, Sühnel J.

Bioinformatics. 2005 Sep 15;21(18):3669-71. Epub 2005 Aug 2.

PMID:
16076887
4.

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level.

Chiapello H, Gendrault A, Caron C, Blum J, Petit MA, El Karoui M.

BMC Bioinformatics. 2008 Nov 27;9:498. doi: 10.1186/1471-2105-9-498.

5.

A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses.

Kryukov K, Sumiyama K, Ikeo K, Gojobori T, Saitou N.

Genome Biol Evol. 2012;4(4):501-12. doi: 10.1093/gbe/evs026. Epub 2012 Mar 14.

6.

The genome portal of the Department of Energy Joint Genome Institute.

Grigoriev IV, Nordberg H, Shabalov I, Aerts A, Cantor M, Goodstein D, Kuo A, Minovitsky S, Nikitin R, Ohm RA, Otillar R, Poliakov A, Ratnere I, Riley R, Smirnova T, Rokhsar D, Dubchak I.

Nucleic Acids Res. 2012 Jan;40(Database issue):D26-32. doi: 10.1093/nar/gkr947. Epub 2011 Nov 22.

7.

SNUGB: a versatile genome browser supporting comparative and functional fungal genomics.

Jung K, Park J, Choi J, Park B, Kim S, Ahn K, Choi J, Choi D, Kang S, Lee YH.

BMC Genomics. 2008 Dec 4;9:586. doi: 10.1186/1471-2164-9-586.

8.

Ensembl Genomes 2013: scaling up access to genome-wide data.

Kersey PJ, Allen JE, Christensen M, Davis P, Falin LJ, Grabmueller C, Hughes DS, Humphrey J, Kerhornou A, Khobova J, Langridge N, McDowall MD, Maheswari U, Maslen G, Nuhn M, Ong CK, Paulini M, Pedro H, Toneva I, Tuli MA, Walts B, Williams G, Wilson D, Youens-Clark K, Monaco MK, Stein J, Wei X, Ware D, Bolser DM, Howe KL, Kulesha E, Lawson D, Staines DM.

Nucleic Acids Res. 2014 Jan;42(Database issue):D546-52. doi: 10.1093/nar/gkt979. Epub 2013 Oct 25.

9.

The UCSC genome browser database: update 2007.

Kuhn RM, Karolchik D, Zweig AS, Trumbower H, Thomas DJ, Thakkapallayil A, Sugnet CW, Stanke M, Smith KE, Siepel A, Rosenbloom KR, Rhead B, Raney BJ, Pohl A, Pedersen JS, Hsu F, Hinrichs AS, Harte RA, Diekhans M, Clawson H, Bejerano G, Barber GP, Baertsch R, Haussler D, Kent WJ.

Nucleic Acids Res. 2007 Jan;35(Database issue):D668-73. Epub 2006 Nov 16.

10.

Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes.

Janicki M, Rooke R, Yang G.

Chromosome Res. 2011 Aug;19(6):787-808. doi: 10.1007/s10577-011-9230-7.

PMID:
21850457
11.

Ensembl Genomes 2016: more genomes, more complexity.

Kersey PJ, Allen JE, Armean I, Boddu S, Bolt BJ, Carvalho-Silva D, Christensen M, Davis P, Falin LJ, Grabmueller C, Humphrey J, Kerhornou A, Khobova J, Aranganathan NK, Langridge N, Lowy E, McDowall MD, Maheswari U, Nuhn M, Ong CK, Overduin B, Paulini M, Pedro H, Perry E, Spudich G, Tapanari E, Walts B, Williams G, Tello-Ruiz M, Stein J, Wei S, Ware D, Bolser DM, Howe KL, Kulesha E, Lawson D, Maslen G, Staines DM.

Nucleic Acids Res. 2016 Jan 4;44(D1):D574-80. doi: 10.1093/nar/gkv1209. Epub 2015 Nov 17.

12.

The UCSC Genome Browser Database: update 2006.

Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8.

13.

CandidaDB: a genome database for Candida albicans pathogenomics.

d'Enfert C, Goyard S, Rodriguez-Arnaveilhe S, Frangeul L, Jones L, Tekaia F, Bader O, Albrecht A, Castillo L, Dominguez A, Ernst JF, Fradin C, Gaillardin C, Garcia-Sanchez S, de Groot P, Hube B, Klis FM, Krishnamurthy S, Kunze D, Lopez MC, Mavor A, Martin N, Moszer I, Onésime D, Perez Martin J, Sentandreu R, Valentin E, Brown AJ.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D353-7.

14.

Genomicus: five genome browsers for comparative genomics in eukaryota.

Louis A, Muffato M, Roest Crollius H.

Nucleic Acids Res. 2013 Jan;41(Database issue):D700-5. doi: 10.1093/nar/gks1156. Epub 2012 Nov 27.

15.

PLATCOM: a Platform for Computational Comparative Genomics.

Choi K, Ma Y, Choi JH, Kim S.

Bioinformatics. 2005 May 15;21(10):2514-6. Epub 2005 Feb 24.

PMID:
15731206
16.

DroSpeGe: rapid access database for new Drosophila species genomes.

Gilbert DG.

Nucleic Acids Res. 2007 Jan;35(Database issue):D480-5.

17.

MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity.

Uchiyama I, Higuchi T, Kawai M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D361-5. doi: 10.1093/nar/gkp948. Epub 2009 Nov 11.

18.

Saccharomyces cerevisiae: gene annotation and genome variability, state of the art through comparative genomics.

Louis E.

Methods Mol Biol. 2011;759:31-40. doi: 10.1007/978-1-61779-173-4_2.

PMID:
21863479
19.

PEDANT covers all complete RefSeq genomes.

Walter MC, Rattei T, Arnold R, Güldener U, Münsterkötter M, Nenova K, Kastenmüller G, Tischler P, Wölling A, Volz A, Pongratz N, Jost R, Mewes HW, Frishman D.

Nucleic Acids Res. 2009 Jan;37(Database issue):D408-11. doi: 10.1093/nar/gkn749. Epub 2008 Oct 21.

20.

Genolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts.

Sherman D, Durrens P, Iragne F, Beyne E, Nikolski M, Souciet JL.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D432-5.

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