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Items: 1 to 20 of 172

1.

Geneious plugins for the access of PlasmoDB and PiroplasmaDB databases.

Ma C, Gunther S, Cooke B, Coppel RL.

Parasitol Int. 2013 Apr;62(2):134-6. doi: 10.1016/j.parint.2012.11.003. Epub 2012 Nov 24.

PMID:
23183102
2.

EuPathDB: a portal to eukaryotic pathogen databases.

Aurrecoechea C, Brestelli J, Brunk BP, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer ET, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Srinivasamoorthy G, Stoeckert CJ Jr, Thibodeau R, Treatman C, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D415-9. doi: 10.1093/nar/gkp941. Epub 2009 Nov 13.

3.

PlasmoDB: a functional genomic database for malaria parasites.

Aurrecoechea C, Brestelli J, Brunk BP, Dommer J, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Stoeckert CJ Jr, Treatman C, Wang H.

Nucleic Acids Res. 2009 Jan;37(Database issue):D539-43. doi: 10.1093/nar/gkn814. Epub 2008 Oct 28.

4.

PlasmoDB v5: new looks, new genomes.

Stoeckert CJ Jr, Fischer S, Kissinger JC, Heiges M, Aurrecoechea C, Gajria B, Roos DS.

Trends Parasitol. 2006 Dec;22(12):543-6. Epub 2006 Oct 6.

PMID:
17029963
5.

Genomic databases and resources at the National Center for Biotechnology Information.

Tatusova T.

Methods Mol Biol. 2010;609:17-44. doi: 10.1007/978-1-60327-241-4_2.

PMID:
20221911
6.

ApiDB: integrated resources for the apicomplexan bioinformatics resource center.

Aurrecoechea C, Heiges M, Wang H, Wang Z, Fischer S, Rhodes P, Miller J, Kraemer E, Stoeckert CJ Jr, Roos DS, Kissinger JC.

Nucleic Acids Res. 2007 Jan;35(Database issue):D427-30. Epub 2006 Nov 10.

7.

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.

Bahl A, Brunk B, Crabtree J, Fraunholz MJ, Gajria B, Grant GR, Ginsburg H, Gupta D, Kissinger JC, Labo P, Li L, Mailman MD, Milgram AJ, Pearson DS, Roos DS, Schug J, Stoeckert CJ Jr, Whetzel P.

Nucleic Acids Res. 2003 Jan 1;31(1):212-5.

8.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

9.

GeneCruiser: a web service for the annotation of microarray data.

Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP.

Bioinformatics. 2005 Sep 15;21(18):3681-2. Epub 2005 Jul 19.

PMID:
16030072
10.
11.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

12.

The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis.

Rampp M, Soddemann T, Lederer H.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W15-9.

13.

Bioinformatics and the malaria genome: facilitating access and exploitation of sequence information.

Coppel RL.

Mol Biochem Parasitol. 2001 Dec;118(2):139-45. Review.

PMID:
11738704
14.

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A.

Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.

15.

GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environments.

Kirov SA, Peng X, Baker E, Schmoyer D, Zhang B, Snoddy J.

BMC Bioinformatics. 2005 Mar 24;6:72.

16.

PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).

Bahl A, Brunk B, Coppel RL, Crabtree J, Diskin SJ, Fraunholz MJ, Grant GR, Gupta D, Huestis RL, Kissinger JC, Labo P, Li L, McWeeney SK, Milgram AJ, Roos DS, Schug J, Stoeckert CJ Jr.

Nucleic Acids Res. 2002 Jan 1;30(1):87-90.

17.

CARGO: a web portal to integrate customized biological information.

Cases I, Pisano DG, Andres E, Carro A, Fernández JM, Gómez-López G, Rodriguez JM, Vera JF, Valencia A, Rojas AM.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W16-20. Epub 2007 May 5.

18.

CryptoDB: a Cryptosporidium bioinformatics resource update.

Heiges M, Wang H, Robinson E, Aurrecoechea C, Gao X, Kaluskar N, Rhodes P, Wang S, He CZ, Su Y, Miller J, Kraemer E, Kissinger JC.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D419-22.

19.

BIAS: Bioinformatics Integrated Application Software.

Finak G, Godin N, Hallett M, Pepin F, Rajabi Z, Srivastava V, Tang Z.

Bioinformatics. 2005 Apr 15;21(8):1745-6. Epub 2004 Nov 30.

PMID:
15572471
20.

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