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Items: 1 to 20 of 183

1.

Mapping bacterial functional networks and pathways in Escherichia Coli using synthetic genetic arrays.

Gagarinova A, Babu M, Greenblatt J, Emili A.

J Vis Exp. 2012 Nov 12;(69). pii: 4056. doi: 10.3791/4056.

2.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Greenblatt J, Emili A.

Methods Mol Biol. 2011;765:125-53. doi: 10.1007/978-1-61779-197-0_9.

PMID:
21815091
3.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Emili A.

Methods Mol Biol. 2011;781:99-126. doi: 10.1007/978-1-61779-276-2_7.

PMID:
21877280
4.

eSGA: E. coli synthetic genetic array analysis.

Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, Ali M, Venn P, Safavi-Naini A, Sourour N, Caron S, Choi JY, Laigle L, Nazarians-Armavil A, Deshpande A, Joe S, Datsenko KA, Yamamoto N, Andrews BJ, Boone C, Ding H, Sheikh B, Moreno-Hagelseib G, Greenblatt JF, Emili A.

Nat Methods. 2008 Sep;5(9):789-95. doi: 10.1038/nmeth.1239.

PMID:
18677321
5.

Synthetic genetic array analysis for global mapping of genetic networks in yeast.

Kuzmin E, Sharifpoor S, Baryshnikova A, Costanzo M, Myers CL, Andrews BJ, Boone C.

Methods Mol Biol. 2014;1205:143-68. doi: 10.1007/978-1-4939-1363-3_10.

PMID:
25213244
6.

High-throughput, quantitative analyses of genetic interactions in E. coli.

Typas A, Nichols RJ, Siegele DA, Shales M, Collins SR, Lim B, Braberg H, Yamamoto N, Takeuchi R, Wanner BL, Mori H, Weissman JS, Krogan NJ, Gross CA.

Nat Methods. 2008 Sep;5(9):781-7.

7.

Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe.

Baryshnikova A, Costanzo M, Dixon S, Vizeacoumar FJ, Myers CL, Andrews B, Boone C.

Methods Enzymol. 2010;470:145-79. doi: 10.1016/S0076-6879(10)70007-0. Epub 2010 Mar 1.

PMID:
20946810
8.

Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.

Babu M, Arnold R, Bundalovic-Torma C, Gagarinova A, Wong KS, Kumar A, Stewart G, Samanfar B, Aoki H, Wagih O, Vlasblom J, Phanse S, Lad K, Yeou Hsiung Yu A, Graham C, Jin K, Brown E, Golshani A, Kim P, Moreno-Hagelsieb G, Greenblatt J, Houry WA, Parkinson J, Emili A.

PLoS Genet. 2014 Feb 20;10(2):e1004120. doi: 10.1371/journal.pgen.1004120. eCollection 2014 Feb.

9.

Escherichia coli genes affecting recipient ability in plasmid conjugation: are there any?

Pérez-Mendoza D, de la Cruz F.

BMC Genomics. 2009 Feb 9;10:71. doi: 10.1186/1471-2164-10-71.

10.

Development of a system for discovery of genetic interactions for essential genes in Escherichia coli K-12.

Yong HT, Yamamoto N, Takeuchi R, Hsieh YJ, Conrad TM, Datsenko KA, Nakayashiki T, Wanner BL, Mori H.

Genes Genet Syst. 2013;88(4):233-40.

11.

The Genome-Wide Interaction Network of Nutrient Stress Genes in Escherichia coli.

Côté JP, French S, Gehrke SS, MacNair CR, Mangat CS, Bharat A, Brown ED.

MBio. 2016 Nov 22;7(6). pii: e01714-16. doi: 10.1128/mBio.01714-16. Erratum in: MBio. 2016 Dec 20;7(6):.

12.
13.

Synthetic Genetic Arrays: Automation of Yeast Genetics.

Kuzmin E, Costanzo M, Andrews B, Boone C.

Cold Spring Harb Protoc. 2016 Apr 1;2016(4):pdb.top086652. doi: 10.1101/pdb.top086652.

PMID:
27037078
14.

The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12.

Baba T, Huan HC, Datsenko K, Wanner BL, Mori H.

Methods Mol Biol. 2008;416:183-94. doi: 10.1007/978-1-59745-321-9_12.

PMID:
18392968
15.

Identification of essential genes and synthetic lethal gene combinations in Escherichia coli K-12.

Mori H, Baba T, Yokoyama K, Takeuchi R, Nomura W, Makishi K, Otsuka Y, Dose H, Wanner BL.

Methods Mol Biol. 2015;1279:45-65. doi: 10.1007/978-1-4939-2398-4_4.

PMID:
25636612
16.

Trans-kingdom horizontal DNA transfer from bacteria to yeast is highly plastic due to natural polymorphisms in auxiliary nonessential recipient genes.

Moriguchi K, Yamamoto S, Tanaka K, Kurata N, Suzuki K.

PLoS One. 2013 Sep 13;8(9):e74590. doi: 10.1371/journal.pone.0074590. eCollection 2013. Erratum in: PLoS One. 2015;10(4):e0126431.

17.

Systematic Genetic Screens Reveal the Dynamic Global Functional Organization of the Bacterial Translation Machinery.

Gagarinova A, Stewart G, Samanfar B, Phanse S, White CA, Aoki H, Deineko V, Beloglazova N, Yakunin AF, Golshani A, Brown ED, Babu M, Emili A.

Cell Rep. 2016 Oct 11;17(3):904-916. doi: 10.1016/j.celrep.2016.09.040.

18.

Synthetic genetic array analysis in Saccharomyces cerevisiae.

Tong AH, Boone C.

Methods Mol Biol. 2006;313:171-92.

PMID:
16118434
19.

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