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Items: 1 to 20 of 85

1.

PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants.

Sanseverino W, Hermoso A, D'Alessandro R, Vlasova A, Andolfo G, Frusciante L, Lowy E, Roma G, Ercolano MR.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1167-71. doi: 10.1093/nar/gks1183. Epub 2012 Nov 17.

2.

PRGdb: a bioinformatics platform for plant resistance gene analysis.

Sanseverino W, Roma G, De Simone M, Faino L, Melito S, Stupka E, Frusciante L, Ercolano MR.

Nucleic Acids Res. 2010 Jan;38(Database issue):D814-21. doi: 10.1093/nar/gkp978. Epub 2009 Nov 11.

3.

Full-genome identification and characterization of NBS-encoding disease resistance genes in wheat.

Bouktila D, Khalfallah Y, Habachi-Houimli Y, Mezghani-Khemakhem M, Makni M, Makni H.

Mol Genet Genomics. 2015 Feb;290(1):257-71. doi: 10.1007/s00438-014-0909-2. Epub 2014 Sep 18.

PMID:
25231182
4.

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome.

Schoof H, Zaccaria P, Gundlach H, Lemcke K, Rudd S, Kolesov G, Arnold R, Mewes HW, Mayer KF.

Nucleic Acids Res. 2002 Jan 1;30(1):91-3.

5.

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.

Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, Ware D.

Nucleic Acids Res. 2008 Jan;36(Database issue):D449-54. doi: 10.1093/nar/gkm908.

6.

MASiVEdb: the Sirevirus Plant Retrotransposon Database.

Bousios A, Minga E, Kalitsou N, Pantermali M, Tsaballa A, Darzentas N.

BMC Genomics. 2012 Apr 30;13:158. doi: 10.1186/1471-2164-13-158.

7.

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E.

Nucleic Acids Res. 2008 Jan;36(Database issue):D1009-14. Epub 2007 Nov 5.

8.

GeneDB--an annotation database for pathogens.

Logan-Klumpler FJ, De Silva N, Boehme U, Rogers MB, Velarde G, McQuillan JA, Carver T, Aslett M, Olsen C, Subramanian S, Phan I, Farris C, Mitra S, Ramasamy G, Wang H, Tivey A, Jackson A, Houston R, Parkhill J, Holden M, Harb OS, Brunk BP, Myler PJ, Roos D, Carrington M, Smith DF, Hertz-Fowler C, Berriman M.

Nucleic Acids Res. 2012 Jan;40(Database issue):D98-108. doi: 10.1093/nar/gkr1032. Epub 2011 Nov 23.

9.

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics.

Schoof H, Ernst R, Nazarov V, Pfeifer L, Mewes HW, Mayer KF.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D373-6.

10.

SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanum species.

Vleeshouwers VG, Finkers R, Budding D, Visser M, Jacobs MM, van Berloo R, Pel M, Champouret N, Bakker E, Krenek P, Rietman H, Huigen D, Hoekstra R, Goverse A, Vosman B, Jacobsen E, Visser RG.

BMC Plant Biol. 2011 Aug 18;11:116. doi: 10.1186/1471-2229-11-116.

11.

PlantGDB, plant genome database and analysis tools.

Dong Q, Schlueter SD, Brendel V.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D354-9.

12.

The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes.

Ouedraogo M, Bettembourg C, Bretaudeau A, Sallou O, Diot C, Demeure O, Lecerf F.

PLoS One. 2012;7(11):e50653. doi: 10.1371/journal.pone.0050653. Epub 2012 Nov 28.

13.

PlantGDB: a resource for comparative plant genomics.

Duvick J, Fu A, Muppirala U, Sabharwal M, Wilkerson MD, Lawrence CJ, Lushbough C, Brendel V.

Nucleic Acids Res. 2008 Jan;36(Database issue):D959-65. Epub 2007 Dec 6.

14.

EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome.

Thibaud-Nissen F, Campbell M, Hamilton JP, Zhu W, Buell CR.

BMC Genomics. 2007 Oct 25;8:388.

15.

The institute for genomic research Osa1 rice genome annotation database.

Yuan Q, Ouyang S, Wang A, Zhu W, Maiti R, Lin H, Hamilton J, Haas B, Sultana R, Cheung F, Wortman J, Buell CR.

Plant Physiol. 2005 May;138(1):18-26.

16.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

17.

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions.

Zimmer AD, Lang D, Buchta K, Rombauts S, Nishiyama T, Hasebe M, Van de Peer Y, Rensing SA, Reski R.

BMC Genomics. 2013 Jul 23;14:498. doi: 10.1186/1471-2164-14-498.

18.

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools.

Lamesch P, Berardini TZ, Li D, Swarbreck D, Wilks C, Sasidharan R, Muller R, Dreher K, Alexander DL, Garcia-Hernandez M, Karthikeyan AS, Lee CH, Nelson WD, Ploetz L, Singh S, Wensel A, Huala E.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1202-10. doi: 10.1093/nar/gkr1090. Epub 2011 Dec 2.

19.

Evolutionary meta-analysis of solanaceous resistance gene and solanum resistance gene analog sequences and a practical framework for cross-species comparisons.

Quirin EA, Mann H, Meyer RS, Traini A, Chiusano ML, Litt A, Bradeen JM.

Mol Plant Microbe Interact. 2012 May;25(5):603-12. doi: 10.1094/MPMI-12-11-0318-R.

20.

PMRD: a curated database for genes and mutants involved in plant male reproduction.

Cui X, Wang Q, Yin W, Xu H, Wilson ZA, Wei C, Pan S, Zhang D.

BMC Plant Biol. 2012 Nov 15;12:215. doi: 10.1186/1471-2229-12-215.

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