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Items: 1 to 20 of 216

1.

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II.

Lu Z, Hirschman L.

Database (Oxford). 2012 Nov 17;2012:bas043. doi: 10.1093/database/bas043. Print 2012.

2.

Text mining for the biocuration workflow.

Hirschman L, Burns GA, Krallinger M, Arighi C, Cohen KB, Valencia A, Wu CH, Chatr-Aryamontri A, Dowell KG, Huala E, Lourenço A, Nash R, Veuthey AL, Wiegers T, Winter AG.

Database (Oxford). 2012 Apr 18;2012:bas020. doi: 10.1093/database/bas020. Print 2012.

3.

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.

Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatr-aryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken K, Li Y, Chan J, Muller HM, Cui H, Balhoff JP, Chi-Yang Wu J, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, Wu C.

Database (Oxford). 2013 Jan 17;2013:bas056. doi: 10.1093/database/bas056. Print 2013.

4.

Collaborative biocuration--text-mining development task for document prioritization for curation.

Wiegers TC, Davis AP, Mattingly CJ.

Database (Oxford). 2012 Nov 22;2012:bas037. doi: 10.1093/database/bas037. Print 2012.

5.

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR.

Van Auken K, Fey P, Berardini TZ, Dodson R, Cooper L, Li D, Chan J, Li Y, Basu S, Muller HM, Chisholm R, Huala E, Sternberg PW; WormBase Consortium.

Database (Oxford). 2012 Nov 17;2012:bas040. doi: 10.1093/database/bas040. Print 2012.

6.

Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts.

Wei CH, Harris BR, Li D, Berardini TZ, Huala E, Kao HY, Lu Z.

Database (Oxford). 2012 Nov 17;2012:bas041. doi: 10.1093/database/bas041. Print 2012.

7.

Opportunities for text mining in the FlyBase genetic literature curation workflow.

McQuilton P; FlyBase Consortium.

Database (Oxford). 2012 Nov 17;2012:bas039. doi: 10.1093/database/bas039. Print 2012.

8.

How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience.

Krallinger M, Leitner F, Vazquez M, Salgado D, Marcelle C, Tyers M, Valencia A, Chatr-aryamontri A.

Database (Oxford). 2012 Mar 21;2012:bas017. doi: 10.1093/database/bas017. Print 2012.

9.

Integrating text mining into the MGI biocuration workflow.

Dowell KG, McAndrews-Hill MS, Hill DP, Drabkin HJ, Blake JA.

Database (Oxford). 2009;2009:bap019. Epub 2009 Nov 21.

10.

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges.

Singhal A, Leaman R, Catlett N, Lemberger T, McEntyre J, Polson S, Xenarios I, Arighi C, Lu Z.

Database (Oxford). 2016 Dec 26;2016. pii: baw161. doi: 10.1093/database/baw161. Print 2016.

11.

Developing a biocuration workflow for AgBase, a non-model organism database.

Pillai L, Chouvarine P, Tudor CO, Schmidt CJ, Vijay-Shanker K, McCarthy FM.

Database (Oxford). 2012 Nov 17;2012:bas038. doi: 10.1093/database/bas038. Print 2012.

12.

Overview of the interactive task in BioCreative V.

Wang Q, S Abdul S, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, George N, Gkoutos G, Irin AK, Jensen LJ, Jimenez S, Jue TR, Keseler I, Madan S, Matos S, McQuilton P, Milacic M, Mort M, Natarajan J, Pafilis E, Pereira E, Rao S, Rinaldi F, Rothfels K, Salgado D, Silva RM, Singh O, Stefancsik R, Su CH, Subramani S, Tadepally HD, Tsaprouni L, Vasilevsky N, Wang X, Chatr-Aryamontri A, Laulederkind SJ, Matis-Mitchell S, McEntyre J, Orchard S, Pundir S, Rodriguez-Esteban R, Van Auken K, Lu Z, Schaeffer M, Wu CH, Hirschman L, Arighi CN.

Database (Oxford). 2016 Sep 1;2016. pii: baw119. doi: 10.1093/database/baw119. Print 2016.

13.

Building an efficient curation workflow for the Arabidopsis literature corpus.

Li D, Berardini TZ, Muller RJ, Huala E.

Database (Oxford). 2012 Dec 6;2012:bas047. doi: 10.1093/database/bas047. Print 2012.

14.

BioCreative III interactive task: an overview.

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4. doi: 10.1186/1471-2105-12-S8-S4.

15.

Overview of the gene ontology task at BioCreative IV.

Mao Y, Van Auken K, Li D, Arighi CN, McQuilton P, Hayman GT, Tweedie S, Schaeffer ML, Laulederkind SJ, Wang SJ, Gobeill J, Ruch P, Luu AT, Kim JJ, Chiang JH, Chen YD, Yang CJ, Liu H, Zhu D, Li Y, Yu H, Emadzadeh E, Gonzalez G, Chen JM, Dai HJ, Lu Z.

Database (Oxford). 2014 Aug 25;2014. pii: bau086. doi: 10.1093/database/bau086. Print 2014.

16.

Argo: enabling the development of bespoke workflows and services for disease annotation.

Batista-Navarro R, Carter J, Ananiadou S.

Database (Oxford). 2016 May 17;2016. pii: baw066. doi: 10.1093/database/baw066. Print 2016.

17.

Text-mining-assisted biocuration workflows in Argo.

Rak R, Batista-Navarro RT, Rowley A, Carter J, Ananiadou S.

Database (Oxford). 2014 Jul 18;2014. pii: bau070. doi: 10.1093/database/bau070. Print 2014.

18.

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification.

Wiegers TC, Davis AP, Mattingly CJ.

Database (Oxford). 2014 Jun 10;2014. pii: bau050. doi: 10.1093/database/bau050. Print 2014.

19.

OntoMate: a text-mining tool aiding curation at the Rat Genome Database.

Liu W, Laulederkind SJ, Hayman GT, Wang SJ, Nigam R, Smith JR, De Pons J, Dwinell MR, Shimoyama M.

Database (Oxford). 2015 Jan 25;2015. pii: bau129. doi: 10.1093/database/bau129. Print 2015.

20.

Curation accuracy of model organism databases.

Keseler IM, Skrzypek M, Weerasinghe D, Chen AY, Fulcher C, Li GW, Lemmer KC, Mladinich KM, Chow ED, Sherlock G, Karp PD.

Database (Oxford). 2014 Jun 12;2014. pii: bau058. doi: 10.1093/database/bau058. Print 2014.

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