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Items: 1 to 20 of 208


Metagenomic profiling of microbial composition and antibiotic resistance determinants in Puget Sound.

Port JA, Wallace JC, Griffith WC, Faustman EM.

PLoS One. 2012;7(10):e48000. doi: 10.1371/journal.pone.0048000. Epub 2012 Oct 29.


Metagenomic profiling of gut microbial communities in both wild and artificially reared Bar-headed goose (Anser indicus).

Wang W, Zheng S, Sharshov K, Sun H, Yang F, Wang X, Li L, Xiao Z.

Microbiologyopen. 2017 Apr;6(2). doi: 10.1002/mbo3.429. Epub 2016 Dec 20.


Metagenomic analysis of bacterial community composition and antibiotic resistance genes in a wastewater treatment plant and its receiving surface water.

Tang J, Bu Y, Zhang XX, Huang K, He X, Ye L, Shan Z, Ren H.

Ecotoxicol Environ Saf. 2016 Oct;132:260-9. doi: 10.1016/j.ecoenv.2016.06.016. Epub 2016 Jun 21.


Metagenomic profiling of antibiotic resistance genes and mobile genetic elements in a tannery wastewater treatment plant.

Wang Z, Zhang XX, Huang K, Miao Y, Shi P, Liu B, Long C, Li A.

PLoS One. 2013 Oct 1;8(10):e76079. doi: 10.1371/journal.pone.0076079. eCollection 2013.


The functional potential of microbial communities in hydraulic fracturing source water and produced water from natural gas extraction characterized by metagenomic sequencing.

Mohan AM, Bibby KJ, Lipus D, Hammack RW, Gregory KB.

PLoS One. 2014 Oct 22;9(10):e107682. doi: 10.1371/journal.pone.0107682. eCollection 2014.


Metagenomic frameworks for monitoring antibiotic resistance in aquatic environments.

Port JA, Cullen AC, Wallace JC, Smith MN, Faustman EM.

Environ Health Perspect. 2014 Mar;122(3):222-8. doi: 10.1289/ehp.1307009. Epub 2013 Dec 13.


Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes.

Amos GC, Zhang L, Hawkey PM, Gaze WH, Wellington EM.

Vet Microbiol. 2014 Jul 16;171(3-4):441-7. doi: 10.1016/j.vetmic.2014.02.017. Epub 2014 Feb 16.


Biofilm-growing bacteria involved in the corrosion of concrete wastewater pipes: protocols for comparative metagenomic analyses.

Gomez-Alvarez V.

Methods Mol Biol. 2014;1147:323-40. doi: 10.1007/978-1-4939-0467-9_23.


Metagenomic analyses reveal no differences in genes involved in cellulose degradation under different tillage treatments.

de Vries M, Schöler A, Ertl J, Xu Z, Schloter M.

FEMS Microbiol Ecol. 2015 Jul;91(7). pii: fiv069. doi: 10.1093/femsec/fiv069. Epub 2015 Jun 24.


Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome.

Jones BV, Sun F, Marchesi JR.

BMC Genomics. 2010 Jan 19;11:46. doi: 10.1186/1471-2164-11-46.


Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing.

Xie G, Chain PS, Lo CC, Liu KL, Gans J, Merritt J, Qi F.

Mol Oral Microbiol. 2010 Dec;25(6):391-405. doi: 10.1111/j.2041-1014.2010.00587.x.


Going deeper: metagenome of a hadopelagic microbial community.

Eloe EA, Fadrosh DW, Novotny M, Zeigler Allen L, Kim M, Lombardo MJ, Yee-Greenbaum J, Yooseph S, Allen EE, Lasken R, Williamson SJ, Bartlett DH.

PLoS One. 2011;6(5):e20388. doi: 10.1371/journal.pone.0020388. Epub 2011 May 24.


Comparative metagenomics unveils functions and genome features of microbialite-associated communities along a depth gradient.

Saghaï A, Zivanovic Y, Moreira D, Benzerara K, Bertolino P, Ragon M, Tavera R, López-Archilla AI, López-García P.

Environ Microbiol. 2016 Dec;18(12):4990-5004. doi: 10.1111/1462-2920.13456. Epub 2016 Aug 19.


The bacterial diversity in a Brazilian non-disturbed mangrove sediment.

Dias AC, Andreote FD, Rigonato J, Fiore MF, Melo IS, Araújo WL.

Antonie Van Leeuwenhoek. 2010 Nov;98(4):541-51. doi: 10.1007/s10482-010-9471-z. Epub 2010 Jun 20.


Integrated metagenomic and metaproteomic analyses of marine biofilm communities.

Leary DH, Li RW, Hamdan LJ, Hervey WJ 4th, Lebedev N, Wang Z, Deschamps JR, Kusterbeck AW, Vora GJ.

Biofouling. 2014;30(10):1211-23. doi: 10.1080/08927014.2014.977267.


Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia.

Ahmed W, Staley C, Sidhu J, Sadowsky M, Toze S.

Appl Microbiol Biotechnol. 2017 Feb;101(3):1253-1266. doi: 10.1007/s00253-016-7959-9. Epub 2016 Nov 12.


Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

Lazarevic V, Whiteson K, Huse S, Hernandez D, Farinelli L, Osterås M, Schrenzel J, François P.

J Microbiol Methods. 2009 Dec;79(3):266-71. doi: 10.1016/j.mimet.2009.09.012. Epub 2009 Sep 29.


PanFP: pangenome-based functional profiles for microbial communities.

Jun SR, Robeson MS, Hauser LJ, Schadt CW, Gorin AA.

BMC Res Notes. 2015 Sep 26;8:479. doi: 10.1186/s13104-015-1462-8.


Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

Fierer N, Leff JW, Adams BJ, Nielsen UN, Bates ST, Lauber CL, Owens S, Gilbert JA, Wall DH, Caporaso JG.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21390-5. doi: 10.1073/pnas.1215210110. Epub 2012 Dec 10.


Fate of antibiotic resistance genes in sewage treatment plant revealed by metagenomic approach.

Yang Y, Li B, Zou S, Fang HH, Zhang T.

Water Res. 2014 Oct 1;62:97-106. doi: 10.1016/j.watres.2014.05.019. Epub 2014 Jun 4.


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