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Items: 1 to 20 of 131

1.

Comparative analysis of RNA families reveals distinct repertoires for each domain of life.

Hoeppner MP, Gardner PP, Poole AM.

PLoS Comput Biol. 2012;8(11):e1002752. doi: 10.1371/journal.pcbi.1002752. Epub 2012 Nov 1.

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Ribonucleotide reduction - horizontal transfer of a required function spans all three domains.

Lundin D, Gribaldo S, Torrents E, Sjöberg BM, Poole AM.

BMC Evol Biol. 2010 Dec 10;10:383. doi: 10.1186/1471-2148-10-383.

5.

Evolution of the first genetic cells and the universal genetic code: a hypothesis based on macromolecular coevolution of RNA and proteins.

Rouch DA.

J Theor Biol. 2014 Sep 21;357:220-44. doi: 10.1016/j.jtbi.2014.06.003. Epub 2014 Jun 12.

PMID:
24931677
6.

Ancient horizontal gene transfer and the last common ancestors.

Fournier GP, Andam CP, Gogarten JP.

BMC Evol Biol. 2015 Apr 22;15:70. doi: 10.1186/s12862-015-0350-0.

7.

The effects of model choice and mitigating bias on the ribosomal tree of life.

Lasek-Nesselquist E, Gogarten JP.

Mol Phylogenet Evol. 2013 Oct;69(1):17-38. doi: 10.1016/j.ympev.2013.05.006. Epub 2013 May 22.

PMID:
23707703
8.

The proteomic complexity and rise of the primordial ancestor of diversified life.

Kim KM, Caetano-Anollés G.

BMC Evol Biol. 2011 May 25;11:140. doi: 10.1186/1471-2148-11-140.

9.

Phylogenomic analysis of the cystatin superfamily in eukaryotes and prokaryotes.

Kordis D, Turk V.

BMC Evol Biol. 2009 Nov 18;9:266. doi: 10.1186/1471-2148-9-266.

10.

Parallel adaptations to high temperatures in the Archaean eon.

Boussau B, Blanquart S, Necsulea A, Lartillot N, Gouy M.

Nature. 2008 Dec 18;456(7224):942-5. doi: 10.1038/nature07393. Epub 2008 Nov 26.

PMID:
19037246
11.

Genomics and early cellular evolution. The origin of the DNA world.

Forterre P.

C R Acad Sci III. 2001 Dec;324(12):1067-76. Review.

PMID:
11803805
12.

Untangling the origin of viruses and their impact on cellular evolution.

Nasir A, Sun FJ, Kim KM, Caetano-Anollés G.

Ann N Y Acad Sci. 2015 Apr;1341:61-74. doi: 10.1111/nyas.12735. Epub 2015 Mar 10. Review.

PMID:
25758413
13.

Comparative genomics and bioenergetics.

Castresana J.

Biochim Biophys Acta. 2001 Nov 1;1506(3):147-62. Review.

14.

The many faces of the helix-turn-helix domain: transcription regulation and beyond.

Aravind L, Anantharaman V, Balaji S, Babu MM, Iyer LM.

FEMS Microbiol Rev. 2005 Apr;29(2):231-62. Review.

15.

The ancient Virus World and evolution of cells.

Koonin EV, Senkevich TG, Dolja VV.

Biol Direct. 2006 Sep 19;1:29.

16.

Why are there so many diverse replication machineries?

Forterre P.

J Mol Biol. 2013 Nov 29;425(23):4714-26. doi: 10.1016/j.jmb.2013.09.032. Epub 2013 Sep 26. Review.

PMID:
24075868
17.

The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification.

Cavalier-Smith T.

Int J Syst Evol Microbiol. 2002 Jan;52(Pt 1):7-76. Review.

PMID:
11837318
18.

Modern mRNA proofreading and repair: clues that the last universal common ancestor possessed an RNA genome?

Poole AM, Logan DT.

Mol Biol Evol. 2005 Jun;22(6):1444-55. Epub 2005 Mar 16.

PMID:
15774424
19.

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV.

Genome Res. 1999 Jul;9(7):608-28.

20.

The evolutionary history of the structure of 5S ribosomal RNA.

Sun FJ, Caetano-Anollés G.

J Mol Evol. 2009 Nov;69(5):430-43. doi: 10.1007/s00239-009-9264-z. Epub 2009 Jul 29.

PMID:
19639237

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