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Items: 1 to 20 of 45

1.

Maps for changing landscapes: viewing epigenomic signatures through differentiation.

Bulger M.

Cell Stem Cell. 2012 Nov 2;11(5):581-2. doi: 10.1016/j.stem.2012.10.009.

2.

Unraveling epigenetic landscapes: the enigma of enhancers.

Cantone I, Fisher AG.

Cell Stem Cell. 2011 Feb 4;8(2):128-9. doi: 10.1016/j.stem.2011.01.005.

3.

Discovery and annotation of functional chromatin signatures in the human genome.

Hon G, Wang W, Ren B.

PLoS Comput Biol. 2009 Nov;5(11):e1000566. doi: 10.1371/journal.pcbi.1000566. Epub 2009 Nov 13.

4.

The Myc oncoprotein: a critical evaluation of transactivation and target gene regulation.

Cole MD, McMahon SB.

Oncogene. 1999 May 13;18(19):2916-24. Review.

5.

Delineating transcriptional networks of prognostic gene signatures refines treatment recommendations for lymph node-negative breast cancer patients.

Lanigan F, Brien GL, Fan Y, Madden SF, Jerman E, Maratha A, Aloraifi F, Hokamp K, Dunne EJ, Lohan AJ, Flanagan L, Garbe JC, Stampfer MR, Fridberg M, Jirstrom K, Quinn CM, Loftus B, Gallagher WM, Geraghty J, Bracken AP.

FEBS J. 2015 Sep;282(18):3455-73. doi: 10.1111/febs.13354. Epub 2015 Jul 14.

6.

Epigenomic Landscapes Reflect Neuronal Diversity.

Henikoff S.

Neuron. 2015 Jun 17;86(6):1319-21. doi: 10.1016/j.neuron.2015.06.002.

7.

Comparative epigenomic analysis of murine and human adipogenesis.

Mikkelsen TS, Xu Z, Zhang X, Wang L, Gimble JM, Lander ES, Rosen ED.

Cell. 2010 Oct 1;143(1):156-69. doi: 10.1016/j.cell.2010.09.006.

8.

SUPT6H controls estrogen receptor activity and cellular differentiation by multiple epigenomic mechanisms.

Bedi U, Scheel AH, Hennion M, Begus-Nahrmann Y, Rüschoff J, Johnsen SA.

Oncogene. 2015 Jan 22;34(4):465-73. doi: 10.1038/onc.2013.558. Epub 2014 Jan 20.

PMID:
24441044
9.

Epigenomic annotation of enhancers predicts transcriptional regulators of human neural crest.

Rada-Iglesias A, Bajpai R, Prescott S, Brugmann SA, Swigut T, Wysocka J.

Cell Stem Cell. 2012 Nov 2;11(5):633-48. doi: 10.1016/j.stem.2012.07.006. Epub 2012 Sep 13.

10.

Chromatin conformation signatures of cellular differentiation.

Fraser J, Rousseau M, Shenker S, Ferraiuolo MA, Hayashizaki Y, Blanchette M, Dostie J.

Genome Biol. 2009;10(4):R37. doi: 10.1186/gb-2009-10-4-r37. Epub 2009 Apr 19.

11.

Time for the zebrafish ENCODE.

Sivasubbu S, Sachidanandan C, Scaria V.

J Genet. 2013 Dec;92(3):695-701.

12.
13.

Chromatin in 3D: progress and prospects for plants.

Liu C, Weigel D.

Genome Biol. 2015 Aug 21;16:170. doi: 10.1186/s13059-015-0738-6.

14.

Epigenetic signatures of autism: trimethylated H3K4 landscapes in prefrontal neurons.

Shulha HP, Cheung I, Whittle C, Wang J, Virgil D, Lin CL, Guo Y, Lessard A, Akbarian S, Weng Z.

Arch Gen Psychiatry. 2012 Mar;69(3):314-24. doi: 10.1001/archgenpsychiatry.2011.151. Epub 2011 Nov 7.

PMID:
22065254
15.

Grounded: transcriptional pausing in naive mESCs.

Guenther MG, Young RA.

Cell Stem Cell. 2012 May 4;10(5):484-5. doi: 10.1016/j.stem.2012.04.016.

16.

Chromatin signature discovery via histone modification profile alignments.

Wang J, Lunyak VV, Jordan IK.

Nucleic Acids Res. 2012 Nov;40(21):10642-56. doi: 10.1093/nar/gks848. Epub 2012 Sep 18.

17.

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome.

Hon G, Ren B, Wang W.

PLoS Comput Biol. 2008 Oct;4(10):e1000201. doi: 10.1371/journal.pcbi.1000201. Epub 2008 Oct 17.

18.

Interindividual variation in epigenomic phenomena in humans.

French HJ, Attenborough R, Hardy K, Shannon MF, Williams RB.

Mamm Genome. 2009 Sep-Oct;20(9-10):604-11. doi: 10.1007/s00335-009-9219-0. Epub 2009 Sep 18. Review.

PMID:
19763687
19.

Transcriptional networks inferred from molecular signatures of breast cancer.

Tongbai R, Idelman G, Nordgard SH, Cui W, Jacobs JL, Haggerty CM, Chanock SJ, Børresen-Dale AL, Livingston G, Shaunessy P, Chiang CH, Kristensen VN, Bilke S, Gardner K.

Am J Pathol. 2008 Feb;172(2):495-509. doi: 10.2353/ajpath.2008.061079. Epub 2008 Jan 10.

20.

Using context-specific effect of miRNAs to identify functional associations between miRNAs and gene signatures.

Alshalalfa M, Alhajj R.

BMC Bioinformatics. 2013;14 Suppl 12:S1. doi: 10.1186/1471-2105-14-S12-S1. Epub 2013 Sep 24.

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