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Items: 1 to 20 of 80

1.

MetabR: an R script for linear model analysis of quantitative metabolomic data.

Ernest B, Gooding JR, Campagna SR, Saxton AM, Voy BH.

BMC Res Notes. 2012 Oct 30;5:596. doi: 10.1186/1756-0500-5-596.

2.

MetaboAnalyst: a web server for metabolomic data analysis and interpretation.

Xia J, Psychogios N, Young N, Wishart DS.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W652-60. doi: 10.1093/nar/gkp356. Epub 2009 May 8.

3.

OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize.

Colmsee C, Mascher M, Czauderna T, Hartmann A, Schlüter U, Zellerhoff N, Schmitz J, Bräutigam A, Pick TR, Alter P, Gahrtz M, Witt S, Fernie AR, Börnke F, Fahnenstich H, Bucher M, Dresselhaus T, Weber AP, Schreiber F, Scholz U, Sonnewald U.

BMC Plant Biol. 2012 Dec 29;12:245. doi: 10.1186/1471-2229-12-245.

4.

SpotWhatR: a user-friendly microarray data analysis system.

Koide T, Salem-Izacc SM, Gomes SL, Vêncio RZ.

Genet Mol Res. 2006 Mar 31;5(1):93-107.

6.
7.

An editor for pathway drawing and data visualization in the Biopathways Workbench.

Byrnes RW, Cotter D, Maer A, Li J, Nadeau D, Subramaniam S.

BMC Syst Biol. 2009 Oct 2;3:99. doi: 10.1186/1752-0509-3-99.

8.

Goulphar: rapid access and expertise for standard two-color microarray normalization methods.

Lemoine S, Combes F, Servant N, Le Crom S.

BMC Bioinformatics. 2006 Oct 23;7:467.

9.

MetPA: a web-based metabolomics tool for pathway analysis and visualization.

Xia J, Wishart DS.

Bioinformatics. 2010 Sep 15;26(18):2342-4. doi: 10.1093/bioinformatics/btq418. Epub 2010 Jul 13.

PMID:
20628077
10.

Probabilistic principal component analysis for metabolomic data.

Nyamundanda G, Brennan L, Gormley IC.

BMC Bioinformatics. 2010 Nov 23;11:571. doi: 10.1186/1471-2105-11-571.

11.

Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis.

Redestig H, Kusano M, Fukushima A, Matsuda F, Saito K, Arita M.

BMC Bioinformatics. 2010 Apr 29;11:214. doi: 10.1186/1471-2105-11-214.

12.

The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.

Swertz MA, Dijkstra M, Adamusiak T, van der Velde JK, Kanterakis A, Roos ET, Lops J, Thorisson GA, Arends D, Byelas G, Muilu J, Brookes AJ, de Brock EO, Jansen RC, Parkinson H.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S12. doi: 10.1186/1471-2105-11-S12-S12.

13.

affylmGUI: a graphical user interface for linear modeling of single channel microarray data.

Wettenhall JM, Simpson KM, Satterley K, Smyth GK.

Bioinformatics. 2006 Apr 1;22(7):897-9. Epub 2006 Feb 2.

PMID:
16455752
14.

limmaGUI: a graphical user interface for linear modeling of microarray data.

Wettenhall JM, Smyth GK.

Bioinformatics. 2004 Dec 12;20(18):3705-6. Epub 2004 Aug 5.

PMID:
15297296
15.

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model.

Yizhak K, Benyamini T, Liebermeister W, Ruppin E, Shlomi T.

Bioinformatics. 2010 Jun 15;26(12):i255-60. doi: 10.1093/bioinformatics/btq183.

16.

Codelink: an R package for analysis of GE healthcare gene expression bioarrays.

Diez D, Alvarez R, Dopazo A.

Bioinformatics. 2007 May 1;23(9):1168-9. Epub 2007 Mar 7.

PMID:
17344240
17.

CEBS object model for systems biology data, SysBio-OM.

Xirasagar S, Gustafson S, Merrick BA, Tomer KB, Stasiewicz S, Chan DD, Yost KJ 3rd, Yates JR 3rd, Sumner S, Xiao N, Waters MD.

Bioinformatics. 2004 Sep 1;20(13):2004-15. Epub 2004 Mar 25.

PMID:
15044233
18.

Metabolomic data processing, analysis, and interpretation using MetaboAnalyst.

Xia J, Wishart DS.

Curr Protoc Bioinformatics. 2011 Jun;Chapter 14:Unit 14.10. doi: 10.1002/0471250953.bi1410s34.

PMID:
21633943
19.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
20.

GProX, a user-friendly platform for bioinformatics analysis and visualization of quantitative proteomics data.

Rigbolt KT, Vanselow JT, Blagoev B.

Mol Cell Proteomics. 2011 Aug;10(8):O110.007450. doi: 10.1074/mcp.O110.007450. Epub 2011 May 20.

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