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Items: 1 to 20 of 98

1.

ADAM: automated data management for research datasets.

Woodbridge M, Tomlinson CD, Butcher SA.

Bioinformatics. 2013 Jan 1;29(1):146-7. doi: 10.1093/bioinformatics/bts644. Epub 2012 Oct 29.

2.

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.

Bandrowski AE, Cachat J, Li Y, Müller HM, Sternberg PW, Ciccarese P, Clark T, Marenco L, Wang R, Astakhov V, Grethe JS, Martone ME.

Database (Oxford). 2012 Mar 20;2012:bas005. doi: 10.1093/database/bas005. Print 2012.

3.

SEEK: a systems biology data and model management platform.

Wolstencroft K, Owen S, Krebs O, Nguyen Q, Stanford NJ, Golebiewski M, Weidemann A, Bittkowski M, An L, Shockley D, Snoep JL, Mueller W, Goble C.

BMC Syst Biol. 2015 Jul 11;9:33. doi: 10.1186/s12918-015-0174-y.

4.

OpenStructure: a flexible software framework for computational structural biology.

Biasini M, Mariani V, Haas J, Scheuber S, Schenk AD, Schwede T, Philippsen A.

Bioinformatics. 2010 Oct 15;26(20):2626-8. doi: 10.1093/bioinformatics/btq481. Epub 2010 Aug 23.

5.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

6.

Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90. Epub 2004 Feb 10.

PMID:
14871877
7.

Cytoscape 2.8: new features for data integration and network visualization.

Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T.

Bioinformatics. 2011 Feb 1;27(3):431-2. doi: 10.1093/bioinformatics/btq675. Epub 2010 Dec 12.

8.

Saint: a lightweight integration environment for model annotation.

Lister AL, Pocock M, Taschuk M, Wipat A.

Bioinformatics. 2009 Nov 15;25(22):3026-7. doi: 10.1093/bioinformatics/btp523. Epub 2009 Sep 4.

9.

MRIdb: medical image management for biobank research.

Woodbridge M, Fagiolo G, O'Regan DP.

J Digit Imaging. 2013 Oct;26(5):886-90. doi: 10.1007/s10278-013-9604-9.

10.

ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses.

Stokes TH, Torrance JT, Li H, Wang MD.

BMC Bioinformatics. 2008 May 28;9 Suppl 6:S18. doi: 10.1186/1471-2105-9-S6-S18.

11.
12.

Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager.

Shah AR, Singhal M, Klicker KR, Stephan EG, Wiley HS, Waters KM.

Bioinformatics. 2007 Apr 1;23(7):906-9. Epub 2007 Feb 25.

PMID:
17324940
13.

Ultra-Structure database design methodology for managing systems biology data and analyses.

Maier CW, Long JG, Hemminger BM, Giddings MC.

BMC Bioinformatics. 2009 Aug 19;10:254. doi: 10.1186/1471-2105-10-254.

14.

iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis.

Stocker G, Fischer M, Rieder D, Bindea G, Kainz S, Oberstolz M, McNally JG, Trajanoski Z.

BMC Bioinformatics. 2009 Nov 26;10:390. doi: 10.1186/1471-2105-10-390.

15.

SBRML: a markup language for associating systems biology data with models.

Dada JO, Spasić I, Paton NW, Mendes P.

Bioinformatics. 2010 Apr 1;26(7):932-8. doi: 10.1093/bioinformatics/btq069. Epub 2010 Feb 21.

PMID:
20176582
16.

A System for Information Management in BioMedical Studies--SIMBioMS.

Krestyaninova M, Zarins A, Viksna J, Kurbatova N, Rucevskis P, Neogi SG, Gostev M, Perheentupa T, Knuuttila J, Barrett A, Lappalainen I, Rung J, Podnieks K, Sarkans U, McCarthy MI, Brazma A.

Bioinformatics. 2009 Oct 15;25(20):2768-9. doi: 10.1093/bioinformatics/btp420. Epub 2009 Jul 24.

17.

BioWareDB: the biomedical software and database search engine.

Matthiessen MW.

Bioinformatics. 2003 Nov 22;19(17):2319-20.

PMID:
14630664
18.

SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology.

Adams R, Clark A, Yamaguchi A, Hanlon N, Tsorman N, Ali S, Lebedeva G, Goltsov A, Sorokin A, Akman OE, Troein C, Millar AJ, Goryanin I, Gilmore S.

Bioinformatics. 2013 Mar 1;29(5):664-5. doi: 10.1093/bioinformatics/btt023. Epub 2013 Jan 17.

19.

BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology.

Hoehndorf R, Bacher J, Backhaus M, Gregorio SE Jr, Loebe F, Prüfer K, Uciteli A, Visagie J, Herre H, Kelso J.

BMC Bioinformatics. 2009 May 6;10 Suppl 5:S5. doi: 10.1186/1471-2105-10-S5-S5.

20.

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